[Home] | [Total List]

[176499_at]

Description Y54F10AM.K /REP_DB=WormBase Gene ID /WP=CE26179 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 84      4grp_highest_8_8 > 18      4grp_high_8_8 > 63      6grp_highest_nonorm > 83      6grp_total > 75      4grp_total > 56      6grp_cgc > 66      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 248
1 2 3 4 range
A 396.4
(0.2)
P 		303.6
(-3)
P 		475.1
(3)
P 		318.7
(-2.5)
P 		172
B 370.2
(-2.5)
P 		520.8
(3)
P 		432.4
(-0.2)
P 		356.9
(-3)
P 		164
C 369.8
(-3)
P 		427
(-1.1)
P 		551.8
(3)
P 		390.1
(-2.3)
P 		182
avr 378.8
(-1.9) 		417.1
(-0.2) 		486.4
(3) 		355.2
(-3) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 302
1 2 3 4 5 6 range
A 400.6
(-3)
P 		451.6
(-1.3)
P 		495.4
(0.1)
P 		585.3
(3)
P 		487.4
(-0.2)
P 		511.3
(0.6)
P 		185
B 383.2
(-2.8)
P 		377.3
(-3)
P 		500.4
(1)
P 		512.9
(1.4)
P 		387.2
(-2.7)
P 		563.6
(3)
P 		186
C 393.1
(-2.7)
P 		380.1
(-3)
P 		478.5
(-1)
P 		597.3
(1.4)
P 		413.7
(-2.3)
P 		679.4
(3)
P 		299
avr 392.3
(-3) 		403
(-2.7) 		491.4
(0.1) 		565.2
(2.4) 		429.4
(-1.8) 		584.8
(3) 		193
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 144.3
(3)
P 		65.9
(-1.8)
P 		124.2
(1.8)
P 		46.6
(-3)
P 		98
B 118.1
(1.8)
P 		128.6
(3)
P 		100.2
(-0.2)
P 		76.1
(-3)
P 		53
C 122.4
(-0.3)
P 		122.8
(-0.3)
P 		192.3
(3)
P 		65.8
(-3)
P 		127
avr 128.3
(2.2) 		105.8
(0.4) 		138.9
(3) 		62.8
(-3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 73.9
(-3)
P 		160.6
(3)
P 		107.9
(-0.6)
P 		148.4
(2.2)
P 		147.1
(2.1)
P 		124.5
(0.5)
P 		87
B 133.3
(-2.2)
P 		125.6
(-2.7)
P 		121.5
(-3)
P 		135.8
(-2)
P 		157.3
(-0.6)
P 		210.2
(3)
P 		89
C 145.7
(-1.4)
P 		116
(-3)
P 		121.8
(-2.7)
P 		120.1
(-2.8)
P 		133.9
(-2)
P 		227.4
(3)
P 		111
avr 117.6
(-3) 		134.1
(-1.5) 		117.1
(-3) 		134.8
(-1.5) 		146.1
(-0.5) 		187.4
(3) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176499_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18913
Sequence Type Exemplar sequence
Representative Public ID Y54F10AM.K NCBI
Target Description Y54F10AM.K /REP_DB=WormBase Gene ID /WP=CE26179 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065174(11), NM_065176(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065174 NCBI Caenorhabditis elegans C.Elegans Homeobox family member (ceh-44) (ceh-44) mRNA, complete cds. 11/11 None
NM_065176 NCBI Caenorhabditis elegans C.Elegans Homeobox family member (ceh-44) (ceh-44) mRNA, complete cds. 11/11 None
SNAP00000034923 ENSEMBL cdna:SNAP chromosome:CEL140:III:2543540:2546200:1 11/11 None
GENEFINDER00000034937 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2544363:2546200:1 11/11 None
Y54F10AM.4b ENSEMBL cdna:known chromosome:CEL140:III:2530603:2546388:1 gene:Y54F10AM.4 11/11 None
Y54F10AM.4c ENSEMBL cdna:known chromosome:CEL140:III:2530608:2546371:1 gene:Y54F10AM.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175372 3 2 NM_065174 176499_at (11)
NM_065175 175548_at (11), 176483_at (11)
NM_065176 176499_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2544362-2546200(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y54F10AM.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN84833 C.elegans homeobox protein 44, isoform b [Caenorhabditis elegans] ref|NP_497575.2| C.Elegans Homeobox family member (ceh-44) [Caenorhabditis elegans] 0.0
blast AAN84834 C.elegans homeobox protein 44, isoform c [Caenorhabditis elegans] ref|NP_497577.2| C.Elegans Homeobox family member (ceh-44) [Caenorhabditis elegans] 0.0
blast AAK29942 C.elegans homeobox protein 44, isoform a [Caenorhabditis elegans] ref|NP_497576.1| C.Elegans Homeobox family member (ceh-44) [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497575.2 1 571-593
NP_497577.2 1 573-595
Y54F10AM.4b 1 571-593
Y54F10AM.4c 1 573-595
SNAP00000034923 1 207-229
GENEFINDER00000034937 1 121-143
Sequence
Target Sequence 
>C. ELEGANS:176499_AT
ctccagcacctacaatctctgatgcttcacttgttccaatccttacatcacaacgaaata
gactccacgaaagagtgacgtcactggaagaagccatttcactggaaaagacgaaacaac
tttcagtgcagaatgagattgaaagagttcgagaggagaatattcgattgtgtgagcgga
ttcgatttctgcagtctcctggtggtcagcagcaggcaaatgttgaagccgggctgggga
atgaaaacggaaatcgaaacaagaaggtctcacttcatgacaaaactactctaaatatgg
gtcgcgcgattcttgcgactccaaaaagtcgtactgtattcttctcgtatctcctgattc
ttcatgctctcatcatgcttgttctctacaaattcgcatttgatcaatcggttgttcgag
atgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCAGCACCTACAATCTCTGATGC 652 235 41 Antisense
ACAATCTCTGATGCTTCACTTGTTC 331 115 52 Antisense
TCACTTGTTCCAATCCTTACATCAC 603 627 67 Antisense
GTGAGCGGATTCGATTTCTGCAGTC 61 483 212 Antisense
TCTGCAGTCTCCTGGTGGTCAGCAG 379 609 228 Antisense
AACTACTCTAAATATGGGTCGCGCG 115 141 324 Antisense
ATGGGTCGCGCGATTCTTGCGACTC 96 51 337 Antisense
GTCGTACTGTATTCTTCTCGTATCT 305 473 368 Antisense
CCTGATTCTTCATGCTCTCATCATG 580 265 393 Antisense
TCTCATCATGCTTGTTCTCTACAAA 221 613 408 Antisense
GATCAATCGGTTGTTCGAGATGCTG 525 421 442 Antisense
Sequence Source Affymetrix Proprietary Database