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[176495_at]

Description Y39G10AR.A /REP_DB=WormBase Gene ID /WP=CE26519 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 45      4grp_total > 29      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 174.1
(3)
A 		122
(-0.3)
A 		78.9
(-3)
A 		134.2
(0.5)
A 		95
B 109.5
(-0)
A 		76
(-3)
A 		78.3
(-2.8)
A 		143.7
(3)
A 		68
C 135.1
(1.7)
A 		140.8
(2.3)
A 		86.8
(-3)
A 		148.2
(3)
A 		61
avr 139.6
(2.8) 		112.9
(0.1) 		81.3
(-3) 		142
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 85.1
(0.9)
A 		99.6
(3)
A 		93.8
(2.2)
A 		58
(-3)
A 		60.8
(-2.6)
A 		59.3
(-2.8)
A 		42
B 101.4
(1.1)
A 		114.4
(1.9)
A 		72.3
(-0.7)
A 		85.3
(0.1)
A 		36.1
(-3)
A 		131.5
(3)
P 		95
C 56.3
(-1.6)
A 		79.8
(0.8)
A 		102.4
(3)
A 		41.9
(-3)
A 		67.3
(-0.5)
A 		98.4
(2.6)
P 		61
avr 80.9
(0.6) 		97.9
(3) 		89.5
(1.8) 		61.7
(-2) 		54.7
(-3) 		96.4
(2.8) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 63.4
(3)
A 		26.5
(-2.1)
A 		20.6
(-2.9)
A 		19.6
(-3)
A 		44
B 34.9
(3)
A 		18.8
(-2.8)
A 		18.1
(-3)
A 		30.6
(1.5)
A 		17
C 44.7
(3)
A 		40.5
(1.7)
A 		30.3
(-1.4)
A 		25
(-3)
A 		20
avr 47.7
(3) 		28.6
(-1.6) 		23
(-3) 		25.1
(-2.5) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 15.7
(-2.6)
A 		35.4
(3)
A 		20.4
(-1.3)
A 		14.7
(-2.9)
A 		18.4
(-1.9)
A 		14.4
(-3)
A 		21
B 35.3
(0.6)
A 		38.1
(1.1)
A 		17.6
(-2.5)
A 		22.6
(-1.6)
A 		14.7
(-3)
A 		49
(3)
P 		34
C 20.9
(0.1)
A 		24.4
(0.9)
A 		26.1
(1.3)
A 		8.4
(-3)
A 		21.8
(0.3)
A 		32.9
(3)
P 		25
avr 24
(0) 		32.6
(3) 		21.4
(-0.9) 		15.2
(-3) 		18.3
(-1.9) 		32.1
(2.8) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176495_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18728
Sequence Type Exemplar sequence
Representative Public ID Y39G10AR.A NCBI
Target Description Y39G10AR.A /REP_DB=WormBase Gene ID /WP=CE26519 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170824(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170824 NCBI Caenorhabditis elegans Y39G10AR.18a (Y39G10AR.18) mRNA, complete cds. 11/11 A 
SNAP00000028470 ENSEMBL cdna:SNAP chromosome:CEL140:I:2377619:2409124:-1 11/11 None
GENEFINDER00000028489 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2395678:2401489:-1 10/11 None
Y39G10AR.18a ENSEMBL cdna:known chromosome:CEL140:I:2382966:2401489:-1 gene:Y39G10AR.18 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
171797 2 1 NM_170824 176495_at (11), 194248_x_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2396080-2402050(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y39G10AR.18
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_740808 Y39G10AR.18a [Caenorhabditis elegans] gb|AAT39977.2| Hypothetical protein Y39G10AR.18a [Caenorhabditis elegans] 0.0
blast NP_740808 Y39G10AR.18a [Caenorhabditis elegans] gb|AAT39977.2| Hypothetical protein Y39G10AR.18a [Caenorhabditis elegans] 1.0E-180
blast NP_740809 Y39G10AR.18b [Caenorhabditis elegans] gb|AAT39978.1| Hypothetical protein Y39G10AR.18b [Caenorhabditis elegans] 1.0E-155
blast CAE60379 Hypothetical protein CBG03980 [Caenorhabditis briggsae] 1.0E-151
blast CAE60379 Hypothetical protein CBG03980 [Caenorhabditis briggsae] 1.0E-147
Protein Domains
Database ID Description E-Value
scop a.2.7.Methicillin resistance protein FemA probable tRNA-binding arm All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Methicillin resistance protein FemA probable tRNA-binding arm 4.30000019073486
Sequence
Target Sequence 
>C. ELEGANS:176495_AT
aattgagctttcgcaagttccttcgaattttgcacaagatcttgccggttattttaaaaa
atttatgagccattttggaaaaaatcacggaaaattcgagcatattcaaggcgatttttt
gaatccgaaattcaaacaactaatttgtgaggaggctaccgtcattttcatcaacaattt
cgcgtttgacgccgcgctgatgctccgaattaatactgagctgctccaggacttgaagca
cggcactcgaattgttacgacgaaagagcttggaaccaataaaaaggagattacattccg
ctcaacaagtgacatcaacgcaatcagccacacaactgagctaaaaaccaccgaatccgc
agtctcctggacttcaagccatgtgaaattctggctcacaactatcgatcacacaaaact
tataaagtactacgaagaccaacgaagacggcaggaagtgaagagctcacgtgaaggatc
agagatcagcgacggacgagatatgggcttgaaaaagcgaaaaagccaacgcgagagcag
tgttcatccggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGAGCTTTCGCAAGTTCCTTCG 90 173 720 Antisense
CACAAGATCTTGCCGGTTATTTTAA 71 193 752 Antisense
TGTGAGGAGGCTACCGTCATTTTCA 51 557 865 Antisense
ACAATTTCGCGTTTGACGCCGCGCT 433 115 893 Antisense
CGCGCTGATGCTCCGAATTAATACT 505 255 912 Antisense
GAAGCACGGCACTCGAATTGTTACG 357 339 954 Antisense
GATTACATTCCGCTCAACAAGTGAC 643 423 1008 Antisense
TAAAAACCACCGAATCCGCAGTCTC 134 641 1061 Antisense
GTCTCCTGGACTTCAAGCCATGTGA 236 469 1081 Antisense
GGCTCACAACTATCGATCACACAAA 698 537 1112 Antisense
ACGCGAGAGCAGTGTTCATCCGGAT 600 89 1248 Antisense
Sequence Source Affymetrix Proprietary Database