[Home] | [Total List]

[176494_at]

Description Y54F10AM.B /REP_DB=WormBase Gene ID /WP=CE26170 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 19      4grp_total > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 39.2
(3)
A 		35.4
(1.3)
A 		28.5
(-1.8)
A 		25.8
(-3)
A 		13
B 52.6
(3)
A 		30.7
(-1.2)
A 		21.6
(-3)
A 		37.3
(0)
A 		31
C 10.9
(-3)
A 		43.3
(3)
A 		16.8
(-1.9)
A 		26
(-0.2)
A 		32
avr 34.2
(2) 		36.5
(3) 		22.3
(-3) 		29.7
(0.1) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 101.8
(3)
A 		11.6
(-3)
A 		32.7
(-1.6)
A 		24.3
(-2.2)
A 		71.9
(1)
A 		26.2
(-2)
A 		90
B 18.7
(-3)
A 		50.8
(0.9)
A 		25.6
(-2.2)
A 		68.1
(3)
A 		34.5
(-1.1)
A 		22.9
(-2.5)
A 		49
C 20.8
(2.6)
A 		11.4
(-1.2)
A 		21.8
(3)
A 		9.9
(-1.8)
A 		15.6
(0.5)
A 		7
(-3)
A 		15
avr 47.1
(3) 		24.6
(-1.8) 		26.7
(-1.3) 		34.1
(0.3) 		40.7
(1.6) 		18.7
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 14.3
(3)
A 		7.7
(-0.8)
A 		7.4
(-0.9)
A 		3.8
(-3)
A 		11
B 16.8
(3)
A 		7.6
(-1.7)
A 		5
(-3)
A 		7.9
(-1.5)
A 		12
C 3.6
(-3)
A 		12.5
(3)
A 		5.9
(-1.4)
A 		4.4
(-2.5)
A 		9
avr 11.6
(3) 		9.3
(0.8) 		6.1
(-2.3) 		5.4
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 18.8
(2)
A 		4.1
(-3)
A 		7.1
(-2)
A 		6.2
(-2.3)
A 		21.7
(3)
A 		6.4
(-2.2)
A 		18
B 6.5
(-2.8)
A 		16.9
(2.4)
A 		6.2
(-3)
A 		18
(3)
A 		14
(1)
A 		8.5
(-1.8)
A 		12
C 7.7
(3)
A 		3.5
(-1.4)
A 		5.5
(0.7)
A 		2
(-3)
A 		5.1
(0.3)
A 		2.3
(-2.7)
A 		6
avr 11
(1) 		8.2
(-1.1) 		6.3
(-2.5) 		8.7
(-0.7) 		13.6
(3) 		5.7
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176494_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18908
Sequence Type Exemplar sequence
Representative Public ID Y54F10AM.B NCBI
Target Description Y54F10AM.B /REP_DB=WormBase Gene ID /WP=CE26170 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y54F10AM.B
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y54F10AM.B Y54F10AM.B /REP_DB=WormBase Gene ID /WP=CE26170 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2532658-2532862(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:176494_AT
tctgcaccacccgtctatgggaagagagcacaacgactacataagtgagagagagtgcgt
gggagagagagagaatagagagacccatccggaagatggccaagaagaaatcgatttgat
gctttccactcaaaaggaagaagaagagaagggagtgagtgagttggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTGCACCACCCGTCTATGGGAAGA 263 609 18 Antisense
GCACCACCCGTCTATGGGAAGAGAG 323 315 21 Antisense
GGGAAGAGAGCACAACGACTACATA 267 493 36 Antisense
GAGCACAACGACTACATAAGTGAGA 167 391 43 Antisense
AAGTGAGAGAGAGTGCGTGGGAGAG 346 159 60 Antisense
GAGTGCGTGGGAGAGAGAGAGAATA 367 399 70 Antisense
GAGAGAATAGAGAGACCCATCCGGA 343 393 86 Antisense
GAGACCCATCCGGAAGATGGCCAAG 178 393 97 Antisense
AAATCGATTTGATGCTTTCCACTCA 93 119 125 Antisense
GATGCTTTCCACTCAAAAGGAAGAA 668 405 135 Antisense
AGAGAAGGGAGTGAGTGAGTTGGGA 255 53 162 Antisense
Sequence Source Affymetrix Proprietary Database