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[176493_at]

Description Y39G10AR.B /REP_DB=WormBase Gene ID /WP=CE26520 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 37      4grp_total > 20      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 92.5
(-2.4)
A 		93.8
(-2.3)
A 		85.8
(-3)
A 		153.2
(3)
A 		67
B 81.7
(-0.2)
A 		77.5
(-0.6)
A 		49.3
(-3)
A 		119
(3)
A 		70
C 121.3
(1.9)
A 		91.4
(-0.7)
A 		65.6
(-3)
A 		133.5
(3)
A 		68
avr 98.5
(-0.2) 		87.6
(-1.2) 		66.9
(-3) 		135.2
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 96.2
(3)
A 		68.8
(0.1)
A 		56.3
(-1.2)
A 		63.1
(-0.4)
A 		38.6
(-3)
A 		72.5
(0.5)
A 		58
B 101.9
(3)
A 		52.2
(-1)
A 		56.5
(-0.6)
A 		65.7
(0.1)
A 		27.2
(-3)
A 		67.7
(0.3)
A 		75
C 107.4
(3)
A 		60.8
(0.2)
A 		50.9
(-0.4)
A 		6.7
(-3)
A 		35
(-1.3)
A 		62
(0.3)
A 		101
avr 101.8
(3) 		60.6
(-0.6) 		54.6
(-1.2) 		45.2
(-2) 		33.6
(-3) 		67.4
(-0) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 33.7
(3)
A 		20.4
(-3)
A 		22.4
(-2.1)
A 		22.4
(-2.1)
A 		13
B 26
(3)
A 		19.1
(0.2)
A 		11.4
(-3)
A 		25.4
(2.8)
A 		15
C 40.1
(3)
A 		26.3
(-1.7)
A 		22.9
(-2.9)
A 		22.5
(-3)
A 		18
avr 33.3
(3) 		21.9
(-1.8) 		18.9
(-3) 		23.4
(-1.1) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 17.7
(-0.2)
A 		24.5
(3)
A 		12.3
(-2.7)
A 		16
(-1)
A 		11.6
(-3)
A 		17.7
(-0.2)
A 		13
B 35.5
(3)
A 		17.4
(-1.4)
A 		13.7
(-2.3)
A 		17.4
(-1.4)
A 		11
(-3)
A 		25.3
(0.5)
A 		25
C 39.8
(3)
A 		18.6
(-0.3)
A 		12.9
(-1.2)
A 		1.3
(-3)
A 		11.3
(-1.4)
A 		20.8
(0)
A 		39
avr 31
(3) 		20.2
(-0.3) 		13
(-2.5) 		11.6
(-2.9) 		11.3
(-3) 		21.3
(0) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176493_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18717
Sequence Type Exemplar sequence
Representative Public ID Y39G10AR.B NCBI
Target Description Y39G10AR.B /REP_DB=WormBase Gene ID /WP=CE26520 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170825, NM_170824
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000028480 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2387777:2393356:-1 None
NM_170824 NCBI Caenorhabditis elegans Y39G10AR.18a (Y39G10AR.18) mRNA, complete cds. A 
Y39G10AR.18a ENSEMBL cdna:known chromosome:CEL140:I:2382966:2401489:-1 gene:Y39G10AR.18 A 
SNAP00000028470 ENSEMBL cdna:SNAP chromosome:CEL140:I:2377619:2409124:-1 None
Y39G10AR.18b ENSEMBL cdna:known chromosome:CEL140:I:2384592:2393416:-1 gene:Y39G10AR.18 None
NM_170825 NCBI Caenorhabditis elegans Y39G10AR.18b (Y39G10AR.18) mRNA, complete cds. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000028483 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2384591-2392864(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y39G10AR.18
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_740808 Y39G10AR.18a [Caenorhabditis elegans] gb|AAT39977.2| Hypothetical protein Y39G10AR.18a [Caenorhabditis elegans] 0.0
blast NP_740809 Y39G10AR.18b [Caenorhabditis elegans] gb|AAT39978.1| Hypothetical protein Y39G10AR.18b [Caenorhabditis elegans] 1.0E-166
blast NP_740809 Y39G10AR.18b [Caenorhabditis elegans] gb|AAT39978.1| Hypothetical protein Y39G10AR.18b [Caenorhabditis elegans] 1.0E-155
blast NP_740808 Y39G10AR.18a [Caenorhabditis elegans] gb|AAT39977.2| Hypothetical protein Y39G10AR.18a [Caenorhabditis elegans] 1.0E-155
Protein Domains
Database ID Description E-Value
scop a.2.7.Methicillin resistance protein FemA probable tRNA-binding arm All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Methicillin resistance protein FemA probable tRNA-binding arm 4.30000019073486
Sequence
Target Sequence 
>C. ELEGANS:176493_AT
tggtggtccagatgctgttcggtattttgatgaaattaaaatgccgactcctgttaggta
cacaacttcacaaaaaataaatgataaatcagaatttcacgggtcgctgctggctgtcct
tttgcataattttttgaagcaaacgcgccatattgagaattcatgtcggcgccaagtctt
gctatgcgcctgtgaagcgatgtcacatccaaatgtggatattgcaaagctcactgactt
ggtcattacaactcggcccccgaattttgtcgctcaaattcttcttcccgatgactcacc
gacagcgtctatcgattcgaaagtttcaccgtcttcttcttcttcccgccgtccacgtca
gccaaagccacgtgctaataatactgcagctggggctggtggtggtggaaaacgtggcac
ctctggtggccgtaaatccgacggtggtggtggtggtggagccactgaagacgtcgagct
cgagattcggcaattcgtgcagcacgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTGGTCCAGATGCTGTTCGGTAT 266 553 1287 Antisense
TAAAATGCCGACTCCTGTTAGGTAC 621 637 1323 Antisense
TCAGAATTTCACGGGTCGCTGCTGG 505 623 1375 Antisense
CTGGCTGTCCTTTTGCATAATTTTT 619 241 1396 Antisense
TGAGAATTCATGTCGGCGCCAAGTC 480 569 1440 Antisense
AAGTCTTGCTATGCGCCTGTGAAGC 380 155 1460 Antisense
TGACTTGGTCATTACAACTCGGCCC 655 571 1521 Antisense
TCACCGACAGCGTCTATCGATTCGA 253 627 1582 Antisense
GATTCGAAAGTTTCACCGTCTTCTT 300 431 1600 Antisense
GGTGGAGCCACTGAAGACGTCGAGC 355 499 1741 Antisense
AGATTCGGCAATTCGTGCAGCACGC 212 65 1769 Antisense
Sequence Source Affymetrix Proprietary Database