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[176490_s_at]

Description Y39G10AR.E /REP_DB=WormBase Gene ID /WP=CE21755 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 99      4grp_total > 34      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 4.5
(-2.1)
A 		10.6
(3)
A 		3.4
(-3)
A 		4.4
(-2.2)
A 		7
B 2.3
(-3)
A 		3.6
(-0.3)
A 		5.2
(3)
A 		4.5
(1.6)
A 		3
C 2.8
(-2.3)
A 		4.5
(-0.6)
A 		2.1
(-3)
A 		8.1
(3)
A 		6
avr 3.2
(-3) 		6.2
(3) 		3.6
(-2.2) 		5.7
(2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 3.2
(-3)
A 		4.3
(-2.8)
A 		4.6
(-2.7)
A 		3.8
(-2.9)
A 		20.5
(0.9)
A 		30
(3)
A 		27
B 4
(-2.6)
A 		3
(-3)
A 		4
(-2.6)
A 		3
(-3)
A 		17.8
(3)
A 		8.7
(-0.7)
A 		15
C 4.8
(-2.3)
A 		2.6
(-3)
A 		3.6
(-2.7)
A 		7.4
(-1.4)
A 		20.7
(3)
A 		4.4
(-2.4)
A 		18
avr 4
(-2.7) 		3.3
(-3) 		4.1
(-2.7) 		4.7
(-2.5) 		19.7
(3) 		14.4
(1.1) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.6
(0.4)
A 		2.3
(3)
A 		0.9
(-2.3)
A 		0.7
(-3)
A 		2
B 0.7
(-3)
A 		0.9
(-0.6)
A 		1.2
(3)
A 		1
(0.6)
A 		1
C 0.9
(-1.3)
A 		1.3
(2.1)
A 		0.7
(-3)
A 		1.4
(3)
A 		1
avr 1.1
(-1) 		1.5
(3) 		0.9
(-3) 		1
(-2) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1.5
(-2.2)
A 		1
(-2.6)
A 		1
(-2.6)
A 		6.2
(2)
A 		7.3
(3)
A 		7
B 1.4
(-2.4)
A 		1
(-2.8)
A 		1
(-2.8)
A 		0.8
(-3)
A 		7.2
(3)
A 		3.2
(-0.8)
A 		6
C 1.8
(-2)
A 		0.8
(-3)
A 		0.9
(-2.9)
A 		1.5
(-2.3)
A 		6.7
(3)
A 		1.5
(-2.3)
A 		6
avr 1.3
(-2.7) 		1.1
(-2.9) 		1
(-3) 		1.1
(-2.9) 		6.7
(3) 		4
(0.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176490_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18727
Sequence Type Exemplar sequence
Representative Public ID Y39G10AR.E NCBI
Target Description Y39G10AR.E /REP_DB=WormBase Gene ID /WP=CE21755 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058563(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058563 NCBI Caenorhabditis elegans Y39G10AR.16 (Y39G10AR.16) mRNA, complete cds. 11/11 A 
SNAP00000028461 ENSEMBL cdna:SNAP chromosome:CEL140:I:2330963:2331775:-1 11/11 None
GENEFINDER00000028476 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2330963:2332601:-1 11/11 None
Y39G10AR.16 ENSEMBL cdna:known chromosome:CEL140:I:2330947:2332601:-1 gene:Y39G10AR.16 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000000943 5/11 Cross Hyb Matching Probes None
SNAP00000000932 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2549296-2550544(+) 92.25 95.91
chrI:2330962-2332601(-) 96.05 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39G10AR.16
Entrez Gene 171795 Entrez gene
SwissProt Q95XQ6 EMBL-EBI
WormBase CE21755 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_490964 Y39G10AR.16 [Caenorhabditis elegans] gb|AAK39603.1| Hypothetical protein Y39G10AR.16 [Caenorhabditis elegans] 2.0E-26
blast NP_490964 Y39G10AR.16 [Caenorhabditis elegans] gb|AAK39603.1| Hypothetical protein Y39G10AR.16 [Caenorhabditis elegans] 5.0E-15
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_490964.1 1 13-35
Y39G10AR.16 1 13-35
SNAP00000028461 1 2-24
GENEFINDER00000028476 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:176490_S_AT
atgtaccaccgggcaccgggagaattcacgcggtggtaagggaaaatcggcgagatcaaa
gcgatcgaaacggtcgaaacgggacaagaagcaaaattcgaagagacaacaaaactcaaa
acgacaaaagaagattaagagcaattctgcagctccggcaccaccggccaagagtggagt
tcctgcaaaatcggcggagaaggcaaaggaaggatctcaaagatcggctcgactcaagaa
ggagcagaagtccgagaagaagaagaaggagggatcgcagagatctgcaagatcgaagaa
agcgtctagcgagaagccagaagtcgagaagaagccggaagagccgccagtcgaggatga
agcgaagactccaccagagaagccgaaggttgaggagcctgctccggctccagctccggc
tccagctgctgttgctccagctccaccaccaccgccagagccagccgtcgttcaaccgga
aagccaagcgggcgtcgaatcgatctatttggattctggaaaaccgtcgtacgatgctca
agtgcagaacgctccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTACCACCGGGCACCGGGAGAAT 490 47 105 Antisense
CCGGGCACCGGGAGAATTCACGCGG 695 209 113 Antisense
AGGATCTCAAAGATCGGCTCGACTC 126 57 315 Antisense
GAAAGCGTCTAGCGAGAAGCCAGAA 551 359 402 Antisense
GAGGATGAAGCGAAGACTCCACCAG 611 403 457 Antisense
GACTCCACCAGAGAAGCCGAAGGTT 704 369 471 Antisense
GAAGGTTGAGGAGCCTGCTCCGGCT 517 333 489 Antisense
CGTCGTTCAACCGGAAAGCCAAGCG 348 243 570 Antisense
AAGCCAAGCGGGCGTCGAATCGATC 198 147 585 Antisense
GGAAAACCGTCGTACGATGCTCAAG 182 529 622 Antisense
GATGCTCAAGTGCAGAACGCTCCGT 581 413 637 Antisense
Sequence Source Affymetrix Proprietary Database