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[176486_at]

Description Y39G10AR.N /REP_DB=WormBase Gene ID /WP=CE21761 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 74      6grp_high1_10_10 > 47      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 85      6grp_total > 47      4grp_total > 12      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 667
1 2 3 4 range
A 639.1
(-0.5)
P 		466.7
(-2.3)
P 		398.3
(-3)
P 		966.3
(3)
P 		568
B 699.3
(-0.2)
P 		579.6
(-1.3)
P 		386.5
(-3)
P 		1053.6
(3)
P 		667
C 521.4
(-1.8)
P 		419.4
(-3)
P 		447.3
(-2.7)
P 		912.7
(3)
P 		493
avr 619.9
(-0.8) 		488.6
(-2.2) 		410.7
(-3) 		977.5
(3) 		567

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 899
1 2 3 4 5 6 range
A 1023.6
(2.2)
P 		526.9
(-2.6)
P 		680.2
(-1.1)
P 		482.3
(-3)
P 		542.4
(-2.4)
P 		1102.1
(3)
P 		620
B 1126.7
(3)
P 		566.1
(-1.7)
P 		792.1
(0.2)
P 		559.5
(-1.8)
P 		418.4
(-3)
P 		1057.1
(2.4)
P 		708
C 791.1
(0.4)
P 		732.7
(-0)
P 		525.7
(-1.4)
P 		692.9
(-0.3)
P 		286.1
(-3)
P 		1185.4
(3)
P 		899
avr 980.5
(1.8) 		608.6
(-1.3) 		666
(-0.9) 		578.2
(-1.6) 		415.6
(-3) 		1114.9
(3) 		699
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 232.7
(3)
P 		101.3
(-3)
P 		104.1
(-2.9)
P 		141.4
(-1.2)
P 		131
B 223
(2.9)
P 		143.1
(-0.6)
P 		89.6
(-3)
P 		224.5
(3)
P 		135
C 172.6
(3)
P 		120.6
(-3)
P 		155.9
(1.1)
P 		153.9
(0.8)
P 		52
avr 209.4
(3) 		121.7
(-2.7) 		116.5
(-3) 		173.3
(0.7) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 304
1 2 3 4 5 6 range
A 188.7
(-0.3)
P 		187.4
(-0.3)
P 		148.1
(-1.9)
P 		122.3
(-3)
P 		163.7
(-1.3)
P 		268.3
(3)
P 		146
B 392
(2.9)
P 		188.4
(-2)
P 		192.3
(-1.9)
P 		148.2
(-3)
P 		170
(-2.5)
P 		394.2
(3)
P 		246
C 293.2
(1)
P 		223.6
(-0.4)
P 		133.8
(-2.2)
P 		139.3
(-2.1)
P 		92.6
(-3)
P 		396.8
(3)
P 		304
avr 291.3
(1.3) 		199.8
(-1.2) 		158.1
(-2.4) 		136.6
(-3) 		142.1
(-2.8) 		353.1
(3) 		217
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176486_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18715
Sequence Type Exemplar sequence
Representative Public ID Y39G10AR.N NCBI
Target Description Y39G10AR.N /REP_DB=WormBase Gene ID /WP=CE21761 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058554(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058554 NCBI Caenorhabditis elegans Y39G10AR.10 (Y39G10AR.10) mRNA, complete cds. 11/11 None
SNAP00000028449 ENSEMBL cdna:SNAP chromosome:CEL140:I:2300114:2302634:1 11/11 None
GENEFINDER00000028473 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2300114:2302634:1 11/11 None
Y39G10AR.10.2 ENSEMBL cdna:known chromosome:CEL140:I:2299850:2302806:1 gene:Y39G10AR.10 11/11 None
Y39G10AR.10.1 ENSEMBL cdna:known chromosome:CEL140:I:2300080:2302824:1 gene:Y39G10AR.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2297769-2302634(+) 98.35 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39G10AR.10
Entrez Gene 171787 Entrez gene
SwissProt Q95XR4 EMBL-EBI
WormBase CE26989 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_490955 Y39G10AR.10 [Caenorhabditis elegans] gb|AAK39618.1| Hypothetical protein Y39G10AR.10 [Caenorhabditis elegans] 0.0
blast CAE60294 Hypothetical protein CBG03878 [Caenorhabditis briggsae] 8.0E-33
Sequence
Target Sequence 
>C. ELEGANS:176486_AT
gtgcagtttgcttttgagctccgaagatgatctcagaaccgcacatttggctttagaaag
caaaatgactctcgtttctgaagaatgtattgcactcagagtgtctcgagctaatgctca
gaaagaaattggaaatttgactgaacatcacaaacttgaagtagcactcttggaagatgc
gaaatccggaatccaacaacgtctccattacgccactattgaaatcgagcagctaaaaaa
gatcaatgaggttactcaagcccagtttaagaaggaaacagatgagaaaaatgccgagat
taacgaattccaagctgcaatggtatcaatgaaacagcaatacaatgttcttggcaatca
ttgtcgcgttctgacatctcaaggaatctcggatcgtaccacaattgacaaactccagga
aaccattcgcgagcacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCAGTTTGCTTTTGAGCTCCGAA 614 479 1884 Antisense
GATCTCAGAACCGCACATTTGGCTT 621 417 1912 Antisense
AAGCAAAATGACTCTCGTTTCTGAA 116 151 1941 Antisense
TGCACTCAGAGTGTCTCGAGCTAAT 25 579 1974 Antisense
ATCCGGAATCCAACAACGTCTCCAT 155 39 2067 Antisense
GTCTCCATTACGCCACTATTGAAAT 220 469 2084 Antisense
ATGAGGTTACTCAAGCCCAGTTTAA 606 45 2129 Antisense
GTTCTTGGCAATCATTGTCGCGTTC 238 443 2230 Antisense
GTCGCGTTCTGACATCTCAAGGAAT 372 475 2246 Antisense
GAATCTCGGATCGTACCACAATTGA 61 329 2267 Antisense
TCCAGGAAACCATTCGCGAGCACAC 616 587 2297 Antisense
Sequence Source Affymetrix Proprietary Database