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[176485_at]

Description Y43H11AL.A /REP_DB=WormBase Gene ID /WP=CE25286 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 34      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_highest_nonorm > 90      6grp_total > 02      4grp_total > 38      6grp_highest_sub > 02      6grp_cgc > 40      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 186.3
(3)
P 		112
(-1.2)
P 		79.5
(-3)
P 		171.3
(2.2)
P 		107
B 162.4
(3)
P 		113.5
(-0.3)
P 		112.8
(-0.4)
P 		74.2
(-3)
P 		88
C 123.2
(2.3)
P 		129.2
(3)
P 		76.4
(-3)
P 		95.8
(-0.8)
P 		53
avr 157.3
(3) 		118.2
(-0.5) 		89.6
(-3) 		113.8
(-0.9) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 69.1
(-3)
P 		148
(3)
P 		69.4
(-3)
P 		109.7
(0.1)
P 		89
(-1.5)
P 		108.9
(0)
P 		79
B 93
(1.6)
P 		105.5
(3)
P 		57.7
(-2.4)
P 		102.4
(2.7)
P 		57.6
(-2.4)
P 		52.1
(-3)
P 		53
C 121.2
(3)
P 		118.2
(2.6)
P 		118.6
(2.7)
P 		106.3
(1.2)
P 		74.4
(-2.6)
P 		71.1
(-3)
P 		50
avr 94.4
(-0.5) 		123.9
(3) 		81.9
(-2) 		106.1
(0.9) 		73.7
(-3) 		77.4
(-2.6) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 67.8
(3)
P 		24.3
(-2.6)
P 		20.8
(-3)
P 		25.1
(-2.5)
P 		47
B 51.8
(3)
P 		28
(-1)
P 		26.1
(-1.3)
P 		15.8
(-3)
P 		36
C 40.8
(3)
P 		37.2
(2.1)
P 		26.6
(-0.5)
P 		16.2
(-3)
P 		25
avr 53.5
(3) 		29.8
(-1.1) 		24.5
(-2) 		19
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 12.7
(-3)
P 		52.6
(3)
P 		15.1
(-2.6)
P 		27.8
(-0.7)
P 		26.9
(-0.9)
P 		26.5
(-0.9)
P 		40
B 32.4
(2.2)
P 		35.1
(3)
P 		14
(-3)
P 		27.1
(0.7)
P 		23.4
(-0.3)
P 		19.4
(-1.5)
P 		21
C 44.9
(3)
P 		36.1
(0.8)
P 		30.2
(-0.8)
P 		21.4
(-3)
P 		24.1
(-2.3)
P 		23.8
(-2.4)
P 		24
avr 30
(-0.2) 		41.3
(3) 		19.8
(-3) 		25.4
(-1.4) 		24.8
(-1.6) 		23.2
(-2.1) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176485_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18903
Sequence Type Exemplar sequence
Representative Public ID Y43H11AL.A NCBI
Target Description Y43H11AL.A /REP_DB=WormBase Gene ID /WP=CE25286 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061286(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061286 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-85) (pqn-85) mRNA, complete cds. 9/11 A 
SNAP00000010698 ENSEMBL cdna:SNAP chromosome:CEL140:II:241113:255181:-1 9/11 None
Y43H11AL.3 ENSEMBL cdna:known chromosome:CEL140:II:240729:255181:-1 gene:Y43H11AL.3 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:243395-255181(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pqn-85
Ensembl Y43H11AL.3
Entrez Gene 173410 Entrez gene
WormBase CE36034 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:246558_AT expressed protein at
CANINE:1603674_AT similar to delangin isoform A cfa
CANINE:1586212_AT similar to delangin isoform A cfa
CANINE_2:CFA.14280.1.A1_AT similar to delangin isoform A cfa
CANINE_2:CFA.15547.1.A1_S_AT similar to delangin isoform A cfa
CANINE_2:CFAAFFX.28575.1.S1_AT similar to delangin isoform A cfa
CHICKEN:GGA.16837.1.S1_AT Nipped-B homolog (Drosophila) gga
CHICKEN:GGA.19250.1.S1_AT Nipped-B homolog (Drosophila) gga
CHICKEN:GGA.6053.1.S1_AT Nipped-B homolog (Drosophila) gga
HG-U133_PLUS_2:207108_S_AT Nipped-B homolog (Drosophila) hs
HG-U133A:207108_S_AT Nipped-B homolog (Drosophila) hs
HG-U133A_2:207108_S_AT Nipped-B homolog (Drosophila) hs
HU35KSUBA:N41608_AT Nipped-B homolog (Drosophila) hs
HU35KSUBC:RC_N62911_AT Nipped-B homolog (Drosophila) hs
HU35KSUBD:RC_AA287564_AT Nipped-B homolog (Drosophila) hs
HU35KSUBD:RC_AA490868_AT Nipped-B homolog (Drosophila) hs
HU35KSUBD:RC_AA476616_AT Nipped-B homolog (Drosophila) hs
U133_X3P:G7661841_3P_S_AT Nipped-B homolog (Drosophila) hs
U133_X3P:HS.287586.0.S1_3P_AT Nipped-B homolog (Drosophila) hs
U133_X3P:HS.250468.0.S1_3P_AT Nipped-B homolog (Drosophila) hs
U133_X3P:HS.225767.1.S2_3P_AT Nipped-B homolog (Drosophila) hs
U133_X3P:HS.225767.1.S1_3P_AT Nipped-B homolog (Drosophila) hs
HG-U133A_2:212469_AT Nipped-B homolog (Drosophila) hs
HG-U133_PLUS_2:212469_AT Nipped-B homolog (Drosophila) hs
HG-U133A:212469_AT Nipped-B homolog (Drosophila) hs
HG-U133A_2:212483_AT Nipped-B homolog (Drosophila) hs
HG-U133_PLUS_2:212483_AT Nipped-B homolog (Drosophila) hs
HG-U133A:212483_AT Nipped-B homolog (Drosophila) hs
HG-U133A_2:213918_S_AT Nipped-B homolog (Drosophila) hs
HG-U133_PLUS_2:213918_S_AT Nipped-B homolog (Drosophila) hs
HG-U133A:213918_S_AT Nipped-B homolog (Drosophila) hs
HG-U133_PLUS_2:242352_AT Nipped-B homolog (Drosophila) hs
HG-U133B:242352_AT Nipped-B homolog (Drosophila) hs
HG-U95AV2:33378_AT Nipped-B homolog (Drosophila) hs
HG-U95B:55121_AT Nipped-B homolog (Drosophila) hs
HG-U95E:67590_AT Nipped-B homolog (Drosophila) hs
U133_X3P:HS2.350953.1.S1_3P_X_AT Nipped-B homolog (Drosophila) hs
U133_X3P:HS2.350953.1.S1_3P_AT Nipped-B homolog (Drosophila) hs
HG-U133_PLUS_2:1560474_AT Nipped-B homolog (Drosophila) hs
HG-U95D:84672_R_AT Nipped-B homolog (Drosophila) hs
HG-U95D:86606_AT Nipped-B homolog (Drosophila) hs
HU35KSUBB:RC_H60163_AT Nipped-B homolog (Drosophila) hs
MOUSE430A_2:1453576_AT Nipped-B homolog (Drosophila) mm
MOE430A:1453576_AT Nipped-B homolog (Drosophila) mm
MOUSE430_2:1453576_AT Nipped-B homolog (Drosophila) mm
MU11KSUBA:AA175643_AT Nipped-B homolog (Drosophila) mm
MG-U74AV2:102895_AT Nipped-B homolog (Drosophila) mm
MG-U74BV2:112881_AT Nipped-B homolog (Drosophila) mm
MG-U74CV2:129296_AT Nipped-B homolog (Drosophila) mm
MOE430B:1430309_AT Nipped-B homolog (Drosophila) mm
MOUSE430_2:1430309_AT Nipped-B homolog (Drosophila) mm
MOE430B:1437158_AT Nipped-B homolog (Drosophila) mm
MOUSE430_2:1437158_AT Nipped-B homolog (Drosophila) mm
MOE430B:1442103_AT Nipped-B homolog (Drosophila) mm
MOUSE430_2:1442103_AT Nipped-B homolog (Drosophila) mm
MOE430B:1443992_AT Nipped-B homolog (Drosophila) mm
MOUSE430_2:1443992_AT Nipped-B homolog (Drosophila) mm
MG-U74BV2:105446_AT Nipped-B homolog (Drosophila) (Nipbl), transcript variant B, mRNA mm
MG-U74CV2:129077_R_AT Nipped-B homolog (Drosophila) (Nipbl), transcript variant B, mRNA mm
MG-U74CV2:129868_AT Nipped-B homolog (Drosophila) (Nipbl), transcript variant B, mRNA mm
MOUSE430_2:1447408_AT Nipped-B homolog (Drosophila) (Nipbl), transcript variant B, mRNA mm
MOE430B:1447408_AT Nipped-B homolog (Drosophila) (Nipbl), transcript variant B, mRNA mm
MU19KSUBA:TC18908_AT Nipped-B homolog (Drosophila) (Nipbl), transcript variant B, mRNA mm
MU19KSUBA:TC24868_AT Nipped-B homolog (Drosophila) (Nipbl), transcript variant B, mRNA mm
MU19KSUBB:TC28884_AT Nipped-B homolog (Drosophila) (Nipbl), transcript variant B, mRNA mm
RG-U34A:RC_AI639314_AT delangin (predicted) rn
RG-U34C:RC_AI180223_AT delangin (predicted) rn
RAE230A:1380371_AT delangin (predicted) rn
RAT230_2:1380371_AT delangin (predicted) rn
RAE230B:1395923_AT delangin (predicted) rn
RAT230_2:1395923_AT delangin (predicted) rn
RAE230B:1392470_AT delangin (predicted) rn
RAT230_2:1392470_AT delangin (predicted) rn
RAE230B:1384801_AT Delangin (predicted) rn
RAT230_2:1384801_AT Delangin (predicted) rn
RG-U34B:RC_AI008904_AT Delangin (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAK39330 Prion-like-(q/n-rich)-domain-bearing protein protein 85 [Caenorhabditis elegans] ref|NP_493687.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-85) [Caenorhabditis elegans] sp|Q95XZ5|NPBL_CAEEL Nipped-B-like protein pqn-85 (Prion-like-(Q/n-rich)-domain-bearing protein 85) (SCC2 homolog) 0.0
blast CAE62848 Hypothetical protein CBG07027 [Caenorhabditis briggsae] 0.0
blast XP_793995 PREDICTED: similar to delangin isoform A [Strongylocentrotus purpuratus] 0.0
Sequence
Target Sequence 
>C. ELEGANS:176485_AT
ggaattcttctccagataccataagggtggacttcggcagaaggcgttgactgcgatggg
tcatttctgtgctcaacactcgacatatctgacaaaacggcaactcacgaacacctatct
ggaaatcttgaacgccgccaactcaccacaacaacagcaacaacgaattctggtgctcca
aaatttggaaatgttcttgcaatgcgaagagcaaaagctcgcggcgagtcacgataaatg
ggatgagaacaaggaggcgcagaatctgaaggaaatggaattgagtggatccgggctggg
cagttctgttattcaaaaatactggaaagcggtactcgagtcgtatgttgatgcggatat
tcagttgagaagagccgctgttcaggtttgttctgggcgaaaagttgtagtttgtagcct
agacagtactgaaagtaatggattttatagcatacacatcactagaaattcggtagtctg
tcgtctggctcaccctaaaccagggtctcgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATTCTTCTCCAGATACCATAAG 561 533 5187 Antisense
TGCGATGGGTCATTTCTGTGCTCAA 423 581 5238 Antisense
GTGCTCAACACTCGACATATCTGAC 707 479 5255 Antisense
AAAACGGCAACTCACGAACACCTAT 367 127 5280 Antisense
CTATCTGGAAATCTTGAACGCCGCC 132 225 5301 Antisense
CAACAACGAATTCTGGTGCTCCAAA 253 189 5344 Antisense
GAATTGAGTGGATCCGGGCTGGGCA 225 321 5464 Antisense
GGAAAGCGGTACTCGAGTCGTATGT 407 511 5510 Antisense
AGAGCCGCTGTTCAGGTTTGTTCTG 106 69 5557 Antisense
GAAATTCGGTAGTCTGTCGTCTGGC 43 363 5651 Antisense
GCTCACCCTAAACCAGGGTCTCGTA 530 301 5674 Antisense
Sequence Source Affymetrix Proprietary Database