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[176482_at]

Description Y39G10AR.Q /REP_DB=WormBase Gene ID /WP=CE21764 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 97      4grp_total > 03      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 2.4
(-3)
A 		4.9
(-2.8)
A 		5.2
(-2.7)
A 		66.3
(3)
A 		64
B 2.5
(-3)
A 		2.8
(-3)
A 		5.8
(-2.6)
A 		58
(3)
A 		56
C 28.1
(1.3)
A 		2.3
(-3)
A 		4.4
(-2.7)
A 		38.6
(3)
A 		36
avr 11
(-2.1) 		3.3
(-3) 		5.1
(-2.8) 		54.3
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 4.9
(-3)
A 		5.3
(-3)
A 		5.7
(-3)
A 		52.5
(-0.7)
A 		91.8
(1.2)
P 		130.1
(3)
P 		125
B 4
(-3)
A 		5.5
(-2.9)
A 		6.3
(-2.9)
A 		4.9
(-3)
A 		82.5
(1.2)
P 		115.5
(3)
P 		112
C 6.1
(-2.8)
A 		3.1
(-3)
A 		3.4
(-3)
A 		24.5
(-1.7)
A 		71.3
(1.1)
P 		102.8
(3)
P 		100
avr 5
(-3) 		4.6
(-3) 		5.1
(-3) 		27.3
(-1.8) 		81.9
(1.2) 		116.1
(3) 		112
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 0.9
(-3)
A 		1.1
(-2.9)
A 		1.4
(-2.7)
A 		9.7
(3)
A 		9
B 0.8
(-2.9)
A 		0.7
(-3)
A 		1.3
(-2.7)
A 		12.4
(3)
A 		12
C 9.3
(3)
A 		0.7
(-3)
A 		1.5
(-2.4)
A 		6.5
(1)
A 		9
avr 3.7
(-1) 		0.8
(-3) 		1.4
(-2.6) 		9.5
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 0.9
(-3)
A 		1.9
(-2.8)
A 		1.2
(-2.9)
A 		13.3
(-0.6)
A 		27.7
(2.2)
P 		31.7
(3)
P 		31
B 1.4
(-3)
A 		1.8
(-2.9)
A 		1.5
(-3)
A 		1.3
(-3)
A 		33.5
(1.6)
P 		43.1
(3)
P 		42
C 2.3
(-2.7)
A 		0.9
(-3)
A 		0.9
(-3)
A 		4.9
(-2.3)
A 		23.1
(1)
P 		34.4
(3)
P 		34
avr 1.5
(-2.9) 		1.5
(-2.9) 		1.2
(-3) 		6.5
(-2.1) 		28.1
(1.6) 		36.4
(3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176482_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18708
Sequence Type Exemplar sequence
Representative Public ID Y39G10AR.Q NCBI
Target Description Y39G10AR.Q /REP_DB=WormBase Gene ID /WP=CE21764 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058560(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058560 NCBI Caenorhabditis elegans Y39G10AR.7 (Y39G10AR.7) mRNA, complete cds. 11/11 None
SNAP00000028456 ENSEMBL cdna:SNAP chromosome:CEL140:I:2316310:2317942:1 11/11 None
GENEFINDER00000028477 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2316310:2317942:1 11/11 None
Y39G10AR.7 ENSEMBL cdna:known chromosome:CEL140:I:2316308:2318286:1 gene:Y39G10AR.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2316309-2317942(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39G10AR.7
Entrez Gene 189772 Entrez gene
SwissProt Q95XQ9 EMBL-EBI
WormBase CE21764 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_490961 Y39G10AR.7 [Caenorhabditis elegans] gb|AAK39607.1| Hypothetical protein Y39G10AR.7 [Caenorhabditis elegans] 0.0
blast CAE60332 Hypothetical protein CBG03924 [Caenorhabditis briggsae] 1.0E-101
Sequence
Target Sequence 
>C. ELEGANS:176482_AT
ggttcaacgatcttgtccaatggcgtcatgatattatagccaaaaaacgcttcggtccac
cacgttgtcctccacctccattgacagtcacaatgattggagcaagccgttctcagcgtg
caaacccatttcatcgagtcggagaagttcacccatttgccatggaggtcatggatcacg
ttcgtcggaaaatggacgcgaaacgttcgtatcgtctcgttcccgctggtcctactttcc
ccgcgccacacgagtttatggcgaacgcaaagtgtttggagccgcatctgttcgtggagt
actgctatcagctgacagcggccgcttacgttgatactgggctcaattatccgaatcgtc
ggccaccgatcccgcctcgtatggagccgataccagagcaagcgtgccgggaatcgattt
gctcgtcggcttccgagttctcatccgacggcgagtattccgacgattcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTCAACGATCTTGTCCAATGGCG 88 507 842 Antisense
GCAAACCCATTTCATCGAGTCGGAG 474 303 961 Antisense
GAGTCGGAGAAGTTCACCCATTTGC 487 397 977 Antisense
ATGGAGGTCATGGATCACGTTCGTC 52 53 1003 Antisense
GCGAAACGTTCGTATCGTCTCGTTC 451 289 1039 Antisense
AAAGTGTTTGGAGCCGCATCTGTTC 71 123 1110 Antisense
GTACTGCTATCAGCTGACAGCGGCC 403 459 1140 Antisense
GCGGCCGCTTACGTTGATACTGGGC 6 293 1159 Antisense
GAGCCGATACCAGAGCAAGCGTGCC 96 385 1225 Antisense
CGTGCCGGGAATCGATTTGCTCGTC 340 243 1244 Antisense
GACGGCGAGTATTCCGACGATTCGG 270 375 1288 Antisense
Sequence Source Affymetrix Proprietary Database