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[176481_at]

Description Y43H11AL.F /REP_DB=WormBase Gene ID /WP=CE21923 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 90      4grp_total > 16      6grp_cgc > 95      6grp_cgc_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 7.6
(-0.9)
A 		2.5
(-3)
A 		5
(-2)
A 		17.3
(3)
A 		15
B 8.9
(-3)
A 		21.4
(1.3)
A 		20.4
(1)
A 		26.3
(3)
A 		17
C 15.4
(-3)
A 		21.1
(-1.2)
A 		30.8
(1.9)
A 		34.4
(3)
A 		19
avr 10.6
(-3) 		15
(-1.3) 		18.7
(0.2) 		26
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 39.3
(3)
A 		2.1
(-2.9)
A 		3.7
(-2.7)
A 		31.8
(1.8)
A 		8.5
(-1.9)
A 		1.6
(-3)
A 		38
B 3.5
(-3)
A 		4.5
(-2.8)
A 		11.2
(-1.4)
A 		32.8
(3)
A 		15.8
(-0.5)
A 		19.5
(0.3)
A 		29
C 18.2
(-0)
A 		11.1
(-1.3)
A 		4.5
(-2.5)
A 		35.3
(3)
A 		3.5
(-2.7)
A 		1.6
(-3)
A 		34
avr 20.3
(0.2) 		5.9
(-3) 		6.5
(-2.9) 		33.3
(3) 		9.3
(-2.3) 		7.6
(-2.6) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.8
(3)
A 		0.5
(-3)
A 		1.3
(-0.9)
A 		2.5
(2.2)
A 		2
B 2.8
(-3)
A 		5.3
(2.4)
A 		4.7
(1.1)
A 		5.6
(3)
A 		3
C 5.1
(-3)
A 		6.1
(-1.9)
A 		10.7
(3)
A 		5.8
(-2.3)
A 		6
avr 3.6
(-3) 		4
(-1.8) 		5.6
(3) 		4.6
(-0) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 7.2
(2.3)
A 		0.7
(-2.8)
A 		0.8
(-2.7)
A 		8.1
(3)
A 		2.6
(-1.3)
A 		0.4
(-3)
A 		8
B 1.2
(-3)
A 		1.5
(-2.8)
A 		2.7
(-1.8)
A 		8.7
(3)
A 		6.4
(1.2)
A 		7.3
(1.9)
A 		8
C 6.8
(2.7)
A 		3.4
(-0.4)
A 		1.2
(-2.4)
A 		7.1
(3)
A 		1.1
(-2.5)
A 		0.5
(-3)
A 		7
avr 5.1
(0.3) 		1.9
(-2.7) 		1.6
(-3) 		8
(3) 		3.4
(-1.3) 		2.7
(-2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176481_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18885
Sequence Type Exemplar sequence
Representative Public ID Y43H11AL.F NCBI
Target Description Y43H11AL.F /REP_DB=WormBase Gene ID /WP=CE21923 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y43H11AL.F
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y43H11AL.F Y43H11AL.F /REP_DB=WormBase Gene ID /WP=CE21923 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061286 11/11 Negative Strand Matching Probes A 
SNAP00000010698 11/11 Negative Strand Matching Probes None
Y43H11AL.3 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:251963-252230(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:176481_AT
atcctcctcggttgttgtgaatccagtgacacttgccggcagcttaacccccttctccat
ttcttcaatcaatttcagatcccgctgaagcagctcatcctcgtcatcgtcggatccacg
tccacgtcgtctgccacgtcgtccggtgtctgttggcacgaaattgtcggtcagcgaatc
gtacagattctcgaccatatcacgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCTCCTCGGTTGTTGTGAATCCA 184 39 22 Antisense
TCCTCGGTTGTTGTGAATCCAGTGA 23 591 26 Antisense
TGAATCCAGTGACACTTGCCGGCAG 212 575 39 Antisense
CCTTCTCCATTTCTTCAATCAATTT 239 269 72 Antisense
AATCAATTTCAGATCCCGCTGAAGC 576 171 88 Antisense
TCAGATCCCGCTGAAGCAGCTCATC 663 621 96 Antisense
GTCCGGTGTCTGTTGGCACGAAATT 57 477 162 Antisense
GTTGGCACGAAATTGTCGGTCAGCG 583 435 173 Antisense
ATTGTCGGTCAGCGAATCGTACAGA 82 3 184 Antisense
AATCGTACAGATTCTCGACCATATC 180 169 198 Antisense
TACAGATTCTCGACCATATCACGCT 304 643 203 Antisense
Sequence Source Affymetrix Proprietary Database