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[176480_at]

Description Y39G10AR.R /REP_DB=WormBase Gene ID /WP=CE21765 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 44      4grp_total > 26      6grp_cgc > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 10.5
(-2)
A 		30
(3)
A 		18.1
(-0.1)
A 		6.8
(-3)
A 		23
B 12.9
(-1)
A 		16.9
(3)
A 		11.4
(-2.5)
A 		10.9
(-3)
A 		6
C 12
(-3)
A 		41.5
(-0.4)
A 		21.5
(-2.1)
A 		78.8
(3)
A 		67
avr 11.8
(-3) 		29.5
(2.2) 		17
(-1.5) 		32.2
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 16.2
(-1.5)
A 		23.2
(-0.6)
A 		52.9
(3)
A 		4
(-3)
A 		10
(-2.3)
A 		18.4
(-1.2)
A 		49
B 12.4
(-2)
A 		18.9
(-0.6)
A 		35.1
(3)
A 		9.4
(-2.6)
A 		7.8
(-3)
A 		13.2
(-1.8)
A 		27
C 15.6
(-1.7)
A 		35.6
(3)
A 		25.7
(0.7)
A 		14.2
(-2.1)
A 		10.2
(-3)
A 		16.7
(-1.5)
A 		25
avr 14.7
(-1.9) 		25.9
(0.5) 		37.9
(3) 		9.2
(-3) 		9.3
(-3) 		16.1
(-1.6) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3.8
(0.1)
A 		6.5
(3)
A 		4.7
(1)
A 		1
(-3)
A 		6
B 4.1
(2.7)
A 		4.2
(3)
A 		2.6
(-2.1)
A 		2.3
(-3)
A 		2
C 4
(-3)
A 		11.9
(2.1)
A 		7.5
(-0.7)
A 		13.3
(3)
A 		9
avr 4
(-3) 		7.5
(3) 		4.9
(-1.5) 		5.5
(-0.4) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 3
(-1.9)
A 		8.3
(1.2)
A 		11.5
(3)
A 		1
(-3)
A 		3
(-1.9)
A 		4.5
(-1)
A 		11
B 4.3
(-1.2)
A 		6.3
(0.8)
A 		8.5
(3)
A 		2.5
(-3)
A 		3.2
(-2.3)
A 		4.9
(-0.6)
A 		6
C 5.8
(-0.8)
A 		10.9
(3)
A 		6.5
(-0.3)
A 		2.8
(-3)
A 		3.3
(-2.6)
A 		5.6
(-0.9)
A 		8
avr 4.4
(-0.9) 		8.5
(2.7) 		8.8
(3) 		2.1
(-3) 		3.2
(-2) 		5
(-0.4) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176480_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18716
Sequence Type Exemplar sequence
Representative Public ID Y39G10AR.R NCBI
Target Description Y39G10AR.R /REP_DB=WormBase Gene ID /WP=CE21765 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y39G10AR.R
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y39G10AR.R Y39G10AR.R /REP_DB=WormBase Gene ID /WP=CE21765 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058561 9/11 Negative Strand Matching Probes A 
SNAP00000028457 9/11 Negative Strand Matching Probes None
GENEFINDER00000028491 9/11 Negative Strand Matching Probes None
Y39G10AR.14.2 9/11 Negative Strand Matching Probes None
Y39G10AR.14.1 9/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2318550-2321569(+) 98.39 100.0
Sequence
Target Sequence 
>C. ELEGANS:176480_AT
cgtcgacacgtcccgtggatggatcgacggccgattgtttgagagcctcacgccacaatc
tgaagaagaaaaaaacattttacattcaaaattgctttttattcagtgggcggagccgga
aaagtgtgcttttgcaaccaccgcacgattttttcgcaagccttcagaaatattgatttt
taccgatataatctctgagcaagttcatgtccacatgctccgtcttctcctgattaccgt
cattctcaaagtagagcgagacgagatgatttccgagtcttctatcctgcatctcatcct
gcgcgtcgacaatcaaaaagatcagatcaaaacgagagagaagcgtgtgcggaagctttt
caagacagcttctcgcaataccgttgaacatcagccacacagattcgagttccccagacg
tagagacgtggctgcccgtcgtcaccagccatctcgtcctccattccccgaatctggacg
gtacgatgatcgacggcggcgatgccgagatctccacgtggtccgccacgtcggagtgtt
gaagccgacgacatttgcgacacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTCGACACGTCCCGTGGATGGATC 473 245 135 Antisense
TTTGCAACCACCGCACGATTTTTTC 514 667 265 Antisense
TCTCCTGATTACCGTCATTCTCAAA 241 611 360 Antisense
AGATGATTTCCGAGTCTTCTATCCT 199 67 398 Antisense
TCATCCTGCGCGTCGACAATCAAAA 315 621 428 Antisense
CAGCTTCTCGCAATACCGTTGAACA 197 205 500 Antisense
ATCAGCCACACAGATTCGAGTTCCC 257 29 524 Antisense
AGACGTAGAGACGTGGCTGCCCGTC 147 71 550 Antisense
TCCATTCCCCGAATCTGGACGGTAC 572 589 594 Antisense
TGGTCCGCCACGTCGGAGTGTTGAA 36 553 653 Antisense
TGAAGCCGACGACATTTGCGACACG 615 573 674 Antisense
Sequence Source Affymetrix Proprietary Database