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[176479_at]

Description Y43H11AL.C /REP_DB=WormBase Gene ID /WP=CE21924 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 4grp_high_8_8 > 62      6grp_total > 45      4grp_total > 56      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 175.2
(-1.6)
P 		216.3
(0.2)
P 		279.1
(3)
P 		143.4
(-3)
A 		136
B 155.6
(-1)
P 		208.2
(0.7)
P 		283
(3)
P 		90.5
(-3)
P 		193
C 146.1
(-2.8)
P 		208.5
(2)
P 		222.2
(3)
P 		143
(-3)
A 		79
avr 159
(-1.5) 		211
(0.8) 		261.4
(3) 		125.6
(-3) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 63.4
(-1.7)
A 		53.2
(-3)
A 		85
(1.1)
A 		57.4
(-2.5)
A 		69.5
(-0.9)
A 		99.3
(3)
A 		46
B 90.2
(1.7)
A 		94.4
(2)
A 		103.4
(2.7)
A 		33
(-3)
A 		77
(0.6)
A 		106.7
(3)
P 		74
C 75.8
(0.2)
P 		110.2
(3)
A 		59.7
(-1.1)
A 		36.7
(-3)
A 		79.1
(0.5)
A 		86.3
(1)
P 		74
avr 76.5
(0.7) 		85.9
(1.7) 		82.7
(1.4) 		42.4
(-3) 		75.2
(0.6) 		97.4
(3) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 63.8
(1.9)
P 		47
(0)
P 		73
(3)
P 		21
(-3)
A 		52
B 49.6
(0.9)
P 		51.4
(1.2)
P 		65.6
(3)
P 		19.3
(-3)
P 		46
C 48.4
(-0.3)
P 		59.9
(1)
P 		77.4
(3)
P 		24.1
(-3)
A 		53
avr 53.9
(0.8) 		52.8
(0.7) 		72
(3) 		21.5
(-3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 11.7
(-3)
A 		18.9
(0.5)
A 		18.5
(0.3)
A 		14.6
(-1.6)
A 		21
(1.5)
A 		24.2
(3)
A 		13
B 31.4
(1.4)
A 		31.4
(1.4)
A 		25.1
(0.2)
A 		8.7
(-3)
A 		31.3
(1.4)
A 		39.8
(3)
P 		31
C 28.1
(1.7)
P 		33.6
(3)
A 		15.2
(-1.2)
A 		7.4
(-3)
A 		25.6
(1.2)
A 		28.9
(1.9)
P 		26
avr 23.7
(0.9) 		28
(2.1) 		19.6
(-0.3) 		10.2
(-3) 		26
(1.6) 		31
(3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176479_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18898
Sequence Type Exemplar sequence
Representative Public ID Y43H11AL.C NCBI
Target Description Y43H11AL.C /REP_DB=WormBase Gene ID /WP=CE21924 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061285(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061285 NCBI Caenorhabditis elegans Y43H11AL.2 (Y43H11AL.2) mRNA, complete cds. 10/11 None
SNAP00000010697 ENSEMBL cdna:SNAP chromosome:CEL140:II:233394:239955:-1 10/11 None
GENEFINDER00000010699 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:233394:237805:-1 11/11 None
Y43H11AL.2 ENSEMBL cdna:known chromosome:CEL140:II:232841:237820:-1 gene:Y43H11AL.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:233393-237805(-) 77.97 77.97
Public Domain and Genome References
Gene Title
Ensembl Y43H11AL.2
Entrez Gene 3565323 Entrez gene
SwissProt Q95XZ6 EMBL-EBI
WormBase CE32969 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.23336.1.S1_AT similar to PQ loop repeat containing 2 cfa
CHICKEN:GGAAFFX.12417.1.S1_AT PQ loop repeat containing 2 gga
CHICKEN:GGAAFFX.2494.1.S1_S_AT PQ loop repeat containing 2 gga
CHICKEN:GGAAFFX.2494.2.S1_AT PQ loop repeat containing 2 gga
HG-U133A:220453_AT PQ loop repeat containing 2 hs
HG-U133_PLUS_2:220453_AT PQ loop repeat containing 2 hs
HG-U133A_2:220453_AT PQ loop repeat containing 2 hs
U133_X3P:G8923300_3P_AT PQ loop repeat containing 2 hs
U133_X3P:HS2.263081.2.S1_3P_X_AT PQ loop repeat containing 2 hs
U133_X3P:HS2.263081.2.S1_3P_AT PQ loop repeat containing 2 hs
U133_X3P:1555783_3P_X_AT PQ loop repeat containing 2 hs
HG-U133_PLUS_2:1555781_AT PQ loop repeat containing 2 hs
HG-U133_PLUS_2:1555783_X_AT PQ loop repeat containing 2 hs
HG-U95E:70129_R_AT PQ loop repeat containing 2 hs
HG-U95E:77384_AT PQ loop repeat containing 2 hs
U133_X3P:HS.122953.0.A1_3P_AT PQ loop repeat containing 2 hs
HG-U133_PLUS_2:239546_AT PQ loop repeat containing 2 hs
HG-U133B:239546_AT PQ loop repeat containing 2 hs
HG-U95D:76538_AT PQ loop repeat containing 2 hs
MOE430A:1425632_A_AT PQ loop repeat containing 2 mm
MOUSE430_2:1425632_A_AT PQ loop repeat containing 2 mm
MOUSE430A_2:1425632_A_AT PQ loop repeat containing 2 mm
MG-U74BV2:107498_AT PQ loop repeat containing 2 mm
MG-U74CV2:133873_AT PQ loop repeat containing 2 mm
MU19KSUBB:TC33303_AT PQ loop repeat containing 2 (Pqlc2), mRNA mm
RAE230A:1377179_AT PQ loop repeat containing 2 (predicted) rn
RAT230_2:1377179_AT PQ loop repeat containing 2 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAK39328 Hypothetical protein Y43H11AL.2 [Caenorhabditis elegans] ref|NP_493686.2| Y43H11AL.2 [Caenorhabditis elegans] 0.0
blast CAE62849 Hypothetical protein CBG07028 [Caenorhabditis briggsae] 1.0E-165
blast AAK39328 Hypothetical protein Y43H11AL.2 [Caenorhabditis elegans] ref|NP_493686.2| Y43H11AL.2 [Caenorhabditis elegans] 1.0E-151
blast CAE62849 Hypothetical protein CBG07028 [Caenorhabditis briggsae] 1.0E-135
blast CAI22229 novel protein [Homo sapiens] dbj|BAC85296.1| unnamed protein product [Homo sapiens] 1.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR006603 EMBL-EBI Cystinosin/ERS1p repeat 7.8E-16
Pfam IPR006603 EMBL-EBI Cystinosin/ERS1p repeat 1.7E-14
Pfam IPR006603 EMBL-EBI Cystinosin/ERS1p repeat 7.8E-16
Pfam IPR006603 EMBL-EBI Cystinosin/ERS1p repeat 8.7E-14
Pfam IPR006603 EMBL-EBI Cystinosin/ERS1p repeat 1.7E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493686.2 7 40-59,72-94,104-123,136-155,192-214,234-256,266-288
Y43H11AL.2 7 40-59,72-94,104-123,136-155,192-214,234-256,266-288
SNAP00000010697 6 48-70,80-102,141-163,200-222,242-264,274-296
GENEFINDER00000010699 6 40-59,72-94,104-123,136-155,192-214,234-256
Sequence
Target Sequence 
>C. ELEGANS:176479_AT
aattggatcgatggccgctgtttgctatttcggtggaagaattccccaaattatcaaaaa
ctaccggcattcttcgtgtgaaggactctcgttgaccatgttctacattattgtcgctgc
caattttacttacgggatctctgtgctattggcaacgactagttggctttatttgttgnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnngcagctacaaactaaaaactagccaacatct
cccatggttggctggaagtctcggctgctgctgcttcgacgctgtaatcatctctcaata
ctacctgtaccgtccgaagacaccgctagcagaggacacc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGGATCGATGGCCGCTGTTTGC 195 179 621 Antisense
CGCTGTTTGCTATTTCGGTGGAAGA 694 251 636 Antisense
AAAACTACCGGCATTCTTCGTGTGA 175 129 677 Antisense
TGTGAAGGACTCTCGTTGACCATGT 356 555 697 Antisense
GTCGCTGCCAATTTTACTTACGGGA 132 475 733 Antisense
TTACGGGATCTCTGTGCTATTGGCA 450 683 750 Antisense
TAAAAACTAGCCAACATCTCCCATG 542 639 1082 Antisense
ATCTCCCATGGTTGGCTGGAAGTCT 252 33 1097 Antisense
CTTCGACGCTGTAATCATCTCTCAA 398 219 1134 Antisense
CATCTCTCAATACTACCTGTACCGT 65 213 1149 Antisense
GAAGACACCGCTAGCAGAGGACACC 484 339 1176 Antisense
Sequence Source Affymetrix Proprietary Database