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[176478_at]

Description Y39G10AR.T /REP_DB=WormBase Gene ID /WP=CE26526 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 67      4grp_total > 18      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 4.2
(-3)
A 		16.6
(3)
A 		5.5
(-2.4)
A 		6.7
(-1.8)
A 		12
B 5.7
(-2.4)
A 		5.7
(-2.4)
A 		5
(-3)
A 		11.6
(3)
A 		7
C 2.8
(-3)
A 		3.5
(-2.9)
A 		2.9
(-3)
A 		42.5
(3)
A 		40
avr 4.2
(-3) 		8.6
(-1.4) 		4.5
(-2.9) 		20.3
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 7.7
(-0.4)
A 		7.4
(-0.6)
A 		3.8
(-3)
A 		6.6
(-1.2)
A 		9.2
(0.6)
A 		12.9
(3)
A 		9
B 4.8
(-2.7)
A 		8
(-2.3)
A 		2.2
(-3)
A 		2.7
(-2.9)
A 		3.1
(-2.9)
A 		49.7
(3)
A 		48
C 7.6
(-2.4)
A 		4.4
(-2.9)
A 		14.2
(-1.5)
A 		11
(-1.9)
A 		3.6
(-3)
A 		44.9
(3)
A 		41
avr 6.7
(-2.7) 		6.6
(-2.7) 		6.7
(-2.7) 		6.8
(-2.7) 		5.3
(-3) 		35.8
(3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.5
(-1.8)
A 		3.6
(3)
A 		1.4
(-2.1)
A 		1
(-3)
A 		3
B 1.8
(-0.2)
A 		1.4
(-2.1)
A 		1.2
(-3)
A 		2.5
(3)
A 		1
C 0.9
(-3)
A 		1
(-2.9)
A 		1
(-2.9)
A 		7.2
(3)
A 		6
avr 1.4
(-2.5) 		2
(-1) 		1.2
(-3) 		3.6
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 1.4
(-1.4)
A 		2.6
(1.7)
A 		0.8
(-3)
A 		1.7
(-0.7)
A 		2.8
(2.2)
A 		3.1
(3)
A 		2
B 1.7
(-2.6)
A 		2.6
(-2.3)
A 		0.5
(-3)
A 		0.7
(-2.9)
A 		1.3
(-2.7)
A 		18.5
(3)
A 		18
C 2.8
(-2.3)
A 		1.4
(-2.9)
A 		3.6
(-2)
A 		2.2
(-2.6)
A 		1.2
(-3)
A 		15
(3)
A 		14
avr 2
(-2.7) 		2.2
(-2.6) 		1.6
(-2.9) 		1.5
(-3) 		1.8
(-2.8) 		12.2
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176478_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18739
Sequence Type Exemplar sequence
Representative Public ID Y39G10AR.T NCBI
Target Description Y39G10AR.T /REP_DB=WormBase Gene ID /WP=CE26526 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058565(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058565 NCBI Caenorhabditis elegans Y39G10AR.5 (Y39G10AR.5) mRNA, complete cds. 11/11 None
GENEFINDER00000028482 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2333343:2350469:1 11/11 None
SNAP00000028464 ENSEMBL cdna:SNAP chromosome:CEL140:I:2349018:2350469:1 11/11 None
Y39G10AR.5 ENSEMBL cdna:known chromosome:CEL140:I:2342384:2350469:1 gene:Y39G10AR.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2341829-2350469(+) 97.67 98.47
Public Domain and Genome References
Gene Title
Ensembl Y39G10AR.5
Entrez Gene 189770 Entrez gene
SwissProt Q95XQ4 EMBL-EBI
WormBase CE36737 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_490966 Y39G10AR.5 [Caenorhabditis elegans] gb|AAK39609.2| Hypothetical protein Y39G10AR.5 [Caenorhabditis elegans] 0.0
blast NP_001021756 Y39G10AR.6 [Caenorhabditis elegans] gb|AAO21409.1| Hypothetical protein Y39G10AR.6 [Caenorhabditis elegans] 0.0
blast AAB42343 Udp-glucuronosyltransferase protein 25 [Caenorhabditis elegans] ref|NP_491438.1| C10H11.3 [Caenorhabditis elegans] 1.0E-142
blast AAY86310 Hypothetical protein Y55F3C.9 [Caenorhabditis elegans] 4.0E-97
blast CAB04575 Hypothetical protein K05C4.9 [Caenorhabditis elegans] ref|NP_493562.1| K05C4.9 [Caenorhabditis elegans] 5.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 4.7E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_490966.2 6 10-32,53-72,82-104,111-133,148-169,176-198
Y39G10AR.5 6 10-32,53-72,82-104,111-133,148-169,176-198
GENEFINDER00000028482 6 4-26,495-517,532-554,575-597,612-634,647-666
Sequence
Target Sequence 
>C. ELEGANS:176478_AT
gaaatttgcttcgctggtgtggtgcctgcaaaactgtaattccgatgagctacatcttga
agtactacatgttatcagaaacttgagcattgttcacaagtcatcgattttcaagaaaca
ttttactgcgacagaatttaaagtttttcaccaactcctaaatgactggacgtctaacaa
agcttataacgtgttcacaataatttcactccgcatcttctcctccgaaagagactggac
aacctgtgagttttcctctgatgccaatgatcttctaatcgaccgattccgatatttcca
accatccgagataaccgaaaaagttgaaatctacctgggaatccttgaagatgtgctcaa
aacctcaaggcttgagggacctgtcctctgggcgctgctgacgcttcaaattttgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATTTGCTTCGCTGGTGTGGTGC 686 361 2337 Antisense
GGTGCCTGCAAAACTGTAATTCCGA 398 499 2357 Antisense
GTTTTTCACCAACTCCTAAATGACT 586 447 2479 Antisense
TTCACAATAATTTCACTCCGCATCT 137 687 2530 Antisense
CGCATCTTCTCCTCCGAAAGAGACT 183 255 2548 Antisense
GGACAACCTGTGAGTTTTCCTCTGA 76 527 2573 Antisense
GAGTTTTCCTCTGATGCCAATGATC 8 399 2584 Antisense
GCCAATGATCTTCTAATCGACCGAT 381 277 2599 Antisense
ACCGATTCCGATATTTCCAACCATC 65 89 2618 Antisense
CAAGGCTTGAGGGACCTGTCCTCTG 86 179 2702 Antisense
CGCTGCTGACGCTTCAAATTTTGAC 573 255 2729 Antisense
Sequence Source Affymetrix Proprietary Database