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[176477_at]

Description Y43H11AL.D /REP_DB=WormBase Gene ID /WP=CE26533 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 18      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 90      6grp_total > 19      4grp_total > 54      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 172
1 2 3 4 range
A 176.4
(3)
P 		83.2
(-2.3)
P 		71.7
(-3)
P 		118.1
(-0.3)
P 		105
B 139
(2.8)
P 		140.1
(3)
P 		129.6
(0.7)
P 		112.8
(-3)
P 		27
C 244.1
(3)
P 		192
(0.7)
P 		193.6
(0.8)
P 		105.4
(-3)
P 		139
avr 186.5
(3) 		138.4
(-0.9) 		131.6
(-1.4) 		112.1
(-3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 197
1 2 3 4 5 6 range
A 146.5
(-1)
P 		185.1
(3)
P 		126.6
(-3)
P 		157.7
(0.2)
P 		168.1
(1.3)
P 		128.6
(-2.8)
P 		59
B 162
(-0.9)
P 		165.6
(-0.6)
P 		190.7
(1.7)
P 		139.5
(-3)
P 		204.9
(3)
P 		141.6
(-2.8)
P 		65
C 323.9
(3)
P 		137.8
(-3)
P 		139.1
(-3)
P 		161
(-2.3)
P 		161.6
(-2.2)
P 		177.9
(-1.7)
P 		186
avr 210.8
(3) 		162.8
(-1.7) 		152.1
(-2.7) 		152.7
(-2.7) 		178.2
(-0.2) 		149.4
(-3) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 64.2
(3)
P 		18.1
(-2.9)
P 		18.7
(-2.8)
P 		17.3
(-3)
P 		47
B 44.3
(3)
P 		34.6
(0.1)
P 		30
(-1.2)
P 		24
(-3)
P 		20
C 80.8
(3)
P 		55.2
(0.6)
P 		67.5
(1.7)
P 		17.8
(-3)
P 		63
avr 63.1
(3) 		36
(-0.7) 		38.7
(-0.4) 		19.7
(-3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 27
(-3)
P 		65.8
(3)
P 		27.6
(-2.9)
P 		40
(-1)
P 		50.7
(0.7)
P 		31.3
(-2.3)
P 		39
B 56.4
(-0.5)
P 		55.1
(-0.6)
P 		46.3
(-1.8)
P 		37
(-3)
P 		83.2
(3)
P 		52.8
(-0.9)
P 		46
C 120.1
(3)
P 		42
(-2.3)
P 		35.4
(-2.8)
P 		32.4
(-3)
P 		52.3
(-1.6)
P 		59.5
(-1.1)
P 		88
avr 67.8
(3) 		54.3
(0.4) 		36.4
(-3) 		36.5
(-3) 		62.1
(1.9) 		47.9
(-0.8) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176477_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18895
Sequence Type Exemplar sequence
Representative Public ID Y43H11AL.D NCBI
Target Description Y43H11AL.D /REP_DB=WormBase Gene ID /WP=CE26533 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061284
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000010700 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:226947:232026:-1 None
Y43H11AL.1.1 ENSEMBL cdna:known chromosome:CEL140:II:222705:232738:-1 gene:Y43H11AL.1 None
Y43H11AL.1.3 ENSEMBL cdna:known chromosome:CEL140:II:222705:232740:-1 gene:Y43H11AL.1 None
Y43H11AL.1.2 ENSEMBL cdna:known chromosome:CEL140:II:222705:232719:-1 gene:Y43H11AL.1 None
SNAP00000010696 ENSEMBL cdna:SNAP chromosome:CEL140:II:226613:232717:-1 None
NM_061284 NCBI Caenorhabditis elegans Y43H11AL.1 (Y43H11AL.1) mRNA, complete cds. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000010701 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:223117-232717(-) 92.01 94.43
Public Domain and Genome References
Gene Title
Ensembl Y43H11AL.1
Entrez Gene 173408 Entrez gene
SwissProt Q8IAA7 EMBL-EBI
WormBase CE32968 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN39662 Hypothetical protein Y43H11AL.1 [Caenorhabditis elegans] ref|NP_493685.2| Y43H11AL.1 [Caenorhabditis elegans] 0.0
blast AAN39662 Hypothetical protein Y43H11AL.1 [Caenorhabditis elegans] ref|NP_493685.2| Y43H11AL.1 [Caenorhabditis elegans] 1.0E-178
blast CAE62850 Hypothetical protein CBG07029 [Caenorhabditis briggsae] 9.0E-70
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000010700 1 351-373
Sequence
Target Sequence 
>C. ELEGANS:176477_AT
tgaacttctcgattgctttgcaggattaccatcaccaccaagaggaatgatggatgtatt
ggatgttactgaatcggatcgtctaattacgaaatttggtagttttggaccgaaaagcaa
agtctcaaattcaaaaaaaatttcggtacagtnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttaatttttct
aaagtttacaattaatcagttggagattttactgnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnctgcatagataccattttagtgaaattcaatataaaaattccccaaaaactaacaga
ccgcgtcactgaaatgatcatatcgaaccgagagagaacaaaaaaatatcgtgaacaaga
ggaatggtgcatttgcaatggaatgaatatcaattcgggtatgatggtcgagtgcgagaa
caaaaattgtcccatcaaatgg

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAACTTCTCGATTGCTTTGCAGGA 647 573 798 Antisense
CTTTGCAGGATTACCATCACCACCA 363 223 813 Antisense
GATTACCATCACCACCAAGAGGAAT 303 429 821 Antisense
GGATGTTACTGAATCGGATCGTCTA 148 515 858 Antisense
CTGCATAGATACCATTTTAGTGAAA 218 237 1101 Antisense
CCAAAAACTAACAGACCGCGTCACT 594 259 1143 Antisense
AGACCGCGTCACTGAAATGATCATA 134 71 1155 Antisense
AATGATCATATCGAACCGAGAGAGA 339 165 1170 Antisense
GAGGAATGGTGCATTTGCAATGGAA 540 405 1216 Antisense
ATTCGGGTATGATGGTCGAGTGCGA 272 9 1250 Antisense
GAACAAAAATTGTCCCATCAAATGG 430 351 1275 Antisense
Sequence Source Affymetrix Proprietary Database