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[176476_s_at]

Description Y102A11A.C /REP_DB=WormBase Gene ID /WP=CE26475 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_high1_10_10 > 21      6grp_total > 32      4grp_total > 52      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 218
1 2 3 4 range
A 247.3
(2.1)
P 		274.4
(3)
M 		221.3
(1.3)
A 		88.8
(-3)
A 		186
B 307.1
(3)
P 		275.4
(2.1)
A 		231
(0.8)
A 		100
(-3)
A 		207
C 247.2
(3)
P 		241
(2.7)
P 		196.5
(0.6)
A 		120
(-3)
M 		127
avr 267.2
(3) 		263.6
(2.9) 		216.3
(1.1) 		102.9
(-3) 		164

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 151
1 2 3 4 5 6 range
A 218.9
(2.1)
P 		196.1
(1)
P 		237.4
(3)
P 		158.3
(-0.8)
P 		123.6
(-2.5)
P 		113.3
(-3)
P 		124
B 216.2
(1.9)
P 		212.7
(1.8)
P 		240.9
(3)
P 		144.4
(-1.1)
M 		109.4
(-2.6)
A 		100.8
(-3)
P 		140
C 218.8
(1.8)
P 		215
(1.7)
P 		248.7
(3)
P 		203.5
(1.2)
P 		115.2
(-2.3)
A 		98.2
(-3)
P 		151
avr 218
(1.9) 		207.9
(1.5) 		242.3
(3) 		168.7
(-0.2) 		116.1
(-2.5) 		104.1
(-3) 		138
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 90.1
(3)
P 		59.6
(0.6)
M 		57.9
(0.5)
A 		13
(-3)
A 		77
B 97.9
(3)
P 		68
(0.7)
A 		53.5
(-0.5)
A 		21.3
(-3)
A 		77
C 81.8
(3)
P 		69.3
(1.8)
P 		68.5
(1.7)
A 		20.2
(-3)
M 		62
avr 89.9
(3) 		65.6
(1) 		60
(0.5) 		18.2
(-3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 40.4
(-1.2)
P 		69.7
(3)
P 		51.7
(0.4)
P 		40.1
(-1.2)
P 		37.3
(-1.6)
P 		27.6
(-3)
P 		42
B 75.2
(3)
P 		70.8
(2.3)
P 		58.5
(0.3)
P 		38.3
(-2.9)
M 		44.4
(-1.9)
A 		37.6
(-3)
P 		38
C 81.1
(3)
P 		65.6
(1.1)
P 		63.3
(0.8)
P 		40.9
(-2)
P 		37.3
(-2.5)
A 		32.9
(-3)
P 		48
avr 65.6
(2.5) 		68.7
(3) 		57.8
(1.2) 		39.8
(-1.8) 		39.7
(-1.8) 		32.7
(-3) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176476_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19618
Sequence Type Exemplar sequence
Representative Public ID Y102A11A.C NCBI
Target Description Y102A11A.C /REP_DB=WormBase Gene ID /WP=CE26475 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075974(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075974 NCBI Caenorhabditis elegans Y102A11A.6 (Y102A11A.6) mRNA, complete cds. 11/11 None
SNAP00000043292 ENSEMBL cdna:SNAP chromosome:CEL140:X:2032039:2033089:-1 11/11 None
GENEFINDER00000043301 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2032039:2034146:-1 11/11 None
Y102A11A.6 ENSEMBL cdna:known chromosome:CEL140:X:2032030:2035239:-1 gene:Y102A11A.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2032038-2035023(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y102A11A.6
Entrez Gene 180517 Entrez gene
SwissProt Q95XJ9 EMBL-EBI
WormBase CE27226 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:256210_AT thioredoxin-related at
CANINE_2:CFA.17860.1.S1_S_AT similar to ER-Golgi intermediate compartment 32 kDa protein (ERGIC-32) cfa
CHICKEN:GGAAFFX.1840.2.S1_S_AT similar to KIAA1181 protein gga
MOUSE430_2:1437908_A_AT RIKEN cDNA 1200007D18 gene mm
MOE430A:1437908_A_AT RIKEN cDNA 1200007D18 gene mm
MOUSE430A_2:1437908_A_AT RIKEN cDNA 1200007D18 gene mm
MG-U74BV2:115584_AT RIKEN cDNA 1200007D18 gene mm
MG-U74BV2:115151_AT RIKEN cDNA 1200007D18 gene mm
MG-U74AV2:160184_AT RIKEN cDNA 1200007D18 gene mm
MOE430A:1423333_AT RIKEN cDNA 1200007D18 gene mm
MOUSE430A_2:1423333_AT RIKEN cDNA 1200007D18 gene mm
MOUSE430_2:1423333_AT RIKEN cDNA 1200007D18 gene mm
MOE430A:1423334_AT RIKEN cDNA 1200007D18 gene mm
MOUSE430A_2:1423334_AT RIKEN cDNA 1200007D18 gene mm
MOUSE430_2:1423334_AT RIKEN cDNA 1200007D18 gene mm
MOE430A:1438793_X_AT RIKEN cDNA 1200007D18 gene mm
MOUSE430A_2:1438793_X_AT RIKEN cDNA 1200007D18 gene mm
MOUSE430_2:1438793_X_AT RIKEN cDNA 1200007D18 gene mm
MOE430A:1438792_AT RIKEN cDNA 1200007D18 gene mm
MOUSE430A_2:1438792_AT RIKEN cDNA 1200007D18 gene mm
MOUSE430_2:1438792_AT RIKEN cDNA 1200007D18 gene mm
MU19KSUBA:TC24016_AT RIKEN cDNA 1200007D18 gene, mRNA (cDNA clone MGC:7601 IMAGE:3494155) mm
MU19KSUBB:TC27700_AT RIKEN cDNA 1200007D18 gene, mRNA (cDNA clone MGC:7601 IMAGE:3494155) mm
MU19KSUBB:TC27700_G_AT RIKEN cDNA 1200007D18 gene, mRNA (cDNA clone MGC:7601 IMAGE:3494155) mm
MU19KSUBC:TC36832_AT RIKEN cDNA 1200007D18 gene, mRNA (cDNA clone MGC:7601 IMAGE:3494155) mm
MU19KSUBC:TC36832_G_AT RIKEN cDNA 1200007D18 gene, mRNA (cDNA clone MGC:7601 IMAGE:3494155) mm
Protein Similarities
Method ID Description E-Value
blast AAK39316 Hypothetical protein Y102A11A.6 [Caenorhabditis elegans] ref|NP_508375.1| Y102A11A.6 [Caenorhabditis elegans] 1.0E-165
blast CAE58916 Hypothetical protein CBG02175 [Caenorhabditis briggsae] 1.0E-149
blast AAK39316 Hypothetical protein Y102A11A.6 [Caenorhabditis elegans] ref|NP_508375.1| Y102A11A.6 [Caenorhabditis elegans] 1.0E-136
blast CAE58916 Hypothetical protein CBG02175 [Caenorhabditis briggsae] 1.0E-124
blast AAK39316 Hypothetical protein Y102A11A.6 [Caenorhabditis elegans] ref|NP_508375.1| Y102A11A.6 [Caenorhabditis elegans] 1.0E-120
blast CAE58916 Hypothetical protein CBG02175 [Caenorhabditis briggsae] 1.0E-109
blast NP_001026881 endoplasmic reticulum-golgi intermediate compartment 32 kDa protein isoform 1 [Homo sapiens] gb|AAH14490.1| Endoplasmic reticulum-golgi intermediate compartment 32 kDa protein, isoform 1 [Homo sapiens] gb|AAH12766.1| Endoplasmic reticulum-golgi intermediate compartment 32 kDa protein, isoform 1 [Homo sapiens] sp|Q969X5|ERG32_HUMAN ER-Golgi intermediate compartment 32 kDa protein (ERGIC-32) 5.0E-93
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508375.1 2 26-48,244-266
Y102A11A.6 2 26-48,244-266
SNAP00000043292 1 168-190
GENEFINDER00000043301 2 20-42,234-256
Sequence
Target Sequence 
>C. ELEGANS:176476_S_AT
gaatggccgccatgaagtcgggtttgttgatcaaacgaataaagtctcaattggagatgg
aggatgtcggtttgaaagtcgattcgaaattaacaaagttcctggtaactttcatctgtc
gacacactcggctgctacgcaaccggagagttacgacatgagacatttgattcactccat
caaatttggcgacgatgtttcgcataaaaacctcaaagggagctttgacccgttagccaa
aaggaacacatctcaagaaaatggactcaacactcacgaatacattttgaaaattgtgcc
atccgttcatgaagactactctggcaccattctgaacagctatcaatacacttttggcca
caaatcatacatcacctatcatcactccggaaagattattcctgccgtctggttcaaata
cgagctgcagccaatcaccctcaaacaaaccgaacaaaggcagtctttctacgcgtttct
tacatccatttgtgctgtggttggtggaacattcacggttgctggcatcatcgactcgac
att

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGGCCGCCATGAAGTCGGGTTT 79 333 168 Antisense
GTAACTTTCATCTGTCGACACACTC 502 461 272 Antisense
AATGGACTCAACACTCACGAATACA 317 163 427 Antisense
GTGCCATCCGTTCATGAAGACTACT 149 479 463 Antisense
ACTACTCTGGCACCATTCTGAACAG 382 101 482 Antisense
AATCATACATCACCTATCATCACTC 322 169 530 Antisense
TTATTCCTGCCGTCTGGTTCAAATA 247 679 563 Antisense
AAATACGAGCTGCAGCCAATCACCC 459 115 583 Antisense
CAAAGGCAGTCTTTCTACGCGTTTC 38 191 622 Antisense
GTGGAACATTCACGGTTGCTGGCAT 394 491 671 Antisense
TTGCTGGCATCATCGACTCGACATT 240 701 686 Antisense
Sequence Source Affymetrix Proprietary Database