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[176472_s_at]

Description Y54F10AM.A /REP_DB=WormBase Gene ID /WP=CE26169 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 87      4grp_total > 16      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.9
(-3)
A 		3.8
(-1.3)
A 		2.6
(-2.4)
A 		8.8
(3)
A 		7
B 3.3
(2.5)
A 		2.4
(-2)
A 		2.2
(-3)
A 		3.4
(3)
A 		1
C 2.3
(-3)
A 		3
(-2)
A 		6.6
(3)
A 		2.9
(-2.2)
A 		4
avr 2.5
(-3) 		3.1
(-1.6) 		3.8
(0.1) 		5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 2.5
(-3)
A 		2.7
(-2.9)
A 		1.7
(-3)
A 		9.1
(-2.6)
A 		29.4
(-1.4)
A 		105
(3)
M 		103
B 2.2
(-3)
A 		4
(-2.9)
A 		4.4
(-2.9)
A 		17
(-2.3)
A 		44.9
(-0.9)
A 		126.5
(3)
P 		124
C 1.4
(-3)
A 		1.8
(-3)
A 		3.8
(-2.9)
A 		28
(-1.7)
A 		55.7
(-0.3)
A 		121.3
(3)
P 		120
avr 2
(-3) 		2.8
(-3) 		3.3
(-2.9) 		18
(-2.2) 		43.3
(-0.9) 		117.6
(3) 		116
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.7
(-3)
A 		0.8
(-2)
A 		0.7
(-3)
A 		1.3
(3)
A 		1
B 1.1
(3)
A 		0.6
(-2)
A 		0.5
(-3)
A 		0.7
(-1)
A 		1
C 0.8
(-2)
A 		0.9
(-1.7)
A 		2.3
(3)
A 		0.5
(-3)
A 		2
avr 0.9
(-1.5) 		0.8
(-3) 		1.2
(3) 		0.8
(-3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 0.5
(-3)
A 		1
(-2.9)
A 		0.4
(-3)
A 		2.3
(-2.5)
A 		8.9
(-1)
A 		25.6
(3)
M 		25
B 0.7
(-3)
A 		1.3
(-2.9)
A 		1.1
(-2.9)
A 		4.5
(-2.5)
A 		18.2
(-0.7)
A 		47.2
(3)
P 		47
C 0.5
(-3)
A 		0.5
(-3)
A 		1
(-2.9)
A 		5.6
(-2.2)
A 		18
(-0.4)
A 		40.6
(3)
P 		40
avr 0.6
(-3) 		0.9
(-3) 		0.8
(-3) 		4.1
(-2.4) 		15
(-0.7) 		37.8
(3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176472_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18958
Sequence Type Exemplar sequence
Representative Public ID Y54F10AM.A NCBI
Target Description Y54F10AM.A /REP_DB=WormBase Gene ID /WP=CE26169 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065179(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065179 NCBI Caenorhabditis elegans Y54F10AM.11 (Y54F10AM.11) mRNA, complete cds. 11/11 None
SNAP00000034925 ENSEMBL cdna:SNAP chromosome:CEL140:III:2555915:2564723:-1 11/11 None
GENEFINDER00000034933 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2563039:2564723:-1 11/11 None
Y54F10AM.11 ENSEMBL cdna:known chromosome:CEL140:III:2562971:2563978:-1 gene:Y54F10AM.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2563038-2563972(-) 91.15 91.15
Public Domain and Genome References
Gene Title
Ensembl Y54F10AM.11
Entrez Gene 175374 Entrez gene
SwissProt Q9BKZ7 EMBL-EBI
WormBase CE27286 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK29939 Hypothetical protein Y54F10AM.11 [Caenorhabditis elegans] ref|NP_497580.1| Y54F10AM.11 [Caenorhabditis elegans] 1.0E-147
blast AAK29939 Hypothetical protein Y54F10AM.11 [Caenorhabditis elegans] ref|NP_497580.1| Y54F10AM.11 [Caenorhabditis elegans] 1.0E-146
blast CAA21761 Hypothetical protein Y75B12B.4 [Caenorhabditis elegans] ref|NP_506750.1| Y75B12B.4 [Caenorhabditis elegans] 4.0E-15
blast CAB04888 Hypothetical protein W02A11.8 [Caenorhabditis elegans] ref|NP_493235.1| W02A11.8 [Caenorhabditis elegans] 5.0E-15
blast CAA21761 Hypothetical protein Y75B12B.4 [Caenorhabditis elegans] ref|NP_506750.1| Y75B12B.4 [Caenorhabditis elegans] 5.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 5.9E-20
Pfam IPR000210 EMBL-EBI BTB/POZ domain 5.9E-20
Pfam IPR000210 EMBL-EBI BTB/POZ domain 5.9E-20
Sequence
Target Sequence 
>C. ELEGANS:176472_S_AT
gaatgtggagtcgcttctgacggtttctgcacggtttggcgtggattttgtgatggctcg
ctgcgaaaattggctctcactcgatgagtcaatggatttctcgcttcgtctccagctcgc
cgagacgtacaaattctggaatctctttgacaaacttctggagacgttgcaaagcgaagc
cgactgtcagcaagtgatgaaaatgcgattcccaccgaagttggccagtcattcgatgat
ggcgttgtgtcgccgagctgctgctctcgccaaggaagctgcaaagccagaaggagccgg
agcacaaatcaccgaggaggagctcgaccggactatgaagatgctcgctccagcagaaga
tgaccattctcagatggagctcacagttcccgacgacaacgcttccggaagctctggaac
tctcggagattctgaggacactggtgctgagctcgtggagccggaactctcaaggatcct
tcagaggacgttcgtggtgccgagaagatcgcggaagctgtctgtgccagagccggagga
gtacgaggaggacggcttctcggaaactctggagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGTGGAGTCGCTTCTGACGGTT 573 329 357 Antisense
GACGGTTTCTGCACGGTTTGGCGTG 673 375 375 Antisense
GCTCGCTGCGAAAATTGGCTCTCAC 313 299 412 Antisense
GCAAAGCGAAGCCGACTGTCAGCAA 303 317 525 Antisense
GCTCGCTCCAGCAGAAGATGACCAT 375 299 699 Antisense
TCAGATGGAGCTCACAGTTCCCGAC 136 623 726 Antisense
GGAAGCTCTGGAACTCTCGGAGATT 381 531 763 Antisense
CTGAGGACACTGGTGCTGAGCTCGT 381 239 788 Antisense
GTGGAGCCGGAACTCTCAAGGATCC 207 487 811 Antisense
AGAAGATCGCGGAAGCTGTCTGTGC 170 75 859 Antisense
ACGGCTTCTCGGAAACTCTGGAGCT 428 95 908 Antisense
Sequence Source Affymetrix Proprietary Database