[Home] | [Total List]

[176471_at]

Description Y47D7A.13 /REP_DB=WormBase Gene ID /WP=CE26107 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 49      6grp_total_sub > Increase      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 226
1 2 3 4 range
A 51
(-3)
A 		237.5
(3)
P 		216.1
(2.3)
P 		66.1
(-2.5)
A 		187
B 68.5
(-1.5)
P 		188.5
(2)
P 		222.1
(3)
P 		17.3
(-3)
A 		205
C 11.4
(-3)
A 		225.6
(3)
P 		174.3
(1.6)
P 		30.5
(-2.5)
A 		214
avr 43.6
(-2.8) 		217.2
(3) 		204.2
(2.6) 		38
(-3) 		179

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3230
1 2 3 4 5 6 range
A 45.6
(-3)
A 		745.7
(-1.7)
P 		184.5
(-2.7)
P 		492.7
(-2.2)
P 		2659.3
(1.9)
P 		3275.6
(3)
P 		3230
B 47.6
(-3)
A 		719.1
(-1.5)
P 		155
(-2.8)
P 		440.5
(-2.1)
P 		2149.2
(1.7)
P 		2712.9
(3)
P 		2665
C 102.5
(-3)
M 		646.3
(-1.8)
P 		235.4
(-2.7)
P 		352.8
(-2.5)
P 		2886.1
(3)
P 		1922.1
(0.9)
P 		2784
avr 65.2
(-3) 		703.7
(-1.5) 		191.6
(-2.7) 		428.7
(-2.2) 		2564.9
(2.8) 		2636.9
(3) 		2572
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 18.6
(-1.9)
A 		51.5
(2.4)
P 		56.5
(3)
P 		9.7
(-3)
A 		47
B 21.8
(-0.7)
P 		46.6
(2.4)
P 		51.5
(3)
P 		3.7
(-3)
A 		48
C 3.8
(-3)
A 		64.9
(3)
P 		60.8
(2.6)
P 		5.1
(-2.9)
A 		61
avr 14.7
(-2) 		54.3
(2.8) 		56.3
(3) 		6.2
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1003
1 2 3 4 5 6 range
A 8.4
(-3)
A 		265.2
(-1.1)
P 		40.2
(-2.8)
P 		125
(-2.1)
P 		802.5
(3)
P 		797.5
(3)
P 		794
B 16.6
(-3)
A 		239.3
(-1.7)
P 		37.6
(-2.9)
P 		116.7
(-2.4)
P 		873.2
(2.2)
P 		1011.6
(3)
P 		995
C 38
(-3)
M 		197.2
(-1.9)
P 		59.9
(-2.9)
P 		70.9
(-2.8)
P 		933.9
(3)
P 		643.4
(1.1)
P 		896
avr 21
(-3) 		233.9
(-1.5) 		45.9
(-2.8) 		104.2
(-2.4) 		869.9
(3) 		817.5
(2.6) 		849
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176471_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14921
Sequence Type Exemplar sequence
Representative Public ID Y47D7A.13 NCBI
Target Description Y47D7A.13 /REP_DB=WormBase Gene ID /WP=CE26107 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071825
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000043269 ENSEMBL cdna:SNAP chromosome:CEL140:V:4431635:4432992:-1 11/11 None
GENEFINDER00000043284 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4431635:4433532:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171448 11/11 Negative Strand Matching Probes None
Y47D7A.15 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4431634-4435741(-) 84.31 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE56032 Hypothetical protein CBG23596 [Caenorhabditis briggsae] 4.0E-11
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000043269 1 5-27
GENEFINDER00000043284 1 27-49
Sequence
Target Sequence 
>C. ELEGANS:176471_AT
ggtggatctcaaggaggagccgggggattcggaggagcccaaggaggagctggataccaa
caaggcccaggaccagcagctgtatccggaggaggccaacaaggataccaacaacaacaa
caaaccgctatcgtctctgcaccagctccagtttcgacctaccaggagcaagccccagtt
caagctcaacaggagaccgttgttcaacaacagactttcgaggccgctccagctccaact
caaacttttgaatctgcaccagcagctcaaactcaggaatacggatcccaaggaactgag
caagttgtcgagacctccgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGGATCTCAAGGAGGAGCCGGGG 52 499 1804 Antisense
GGGGGATTCGGAGGAGCCCAAGGAG 700 493 1825 Antisense
CCCAGGACCAGCAGCTGTATCCGGA 300 259 1869 Antisense
GCTGTATCCGGAGGAGGCCAACAAG 473 295 1882 Antisense
CCAGTTTCGACCTACCAGGAGCAAG 36 273 1951 Antisense
CAGGAGCAAGCCCCAGTTCAAGCTC 351 207 1966 Antisense
GCTCAACAGGAGACCGTTGTTCAAC 29 303 1987 Antisense
TCAACAACAGACTTTCGAGGCCGCT 197 629 2007 Antisense
TCAAACTTTTGAATCTGCACCAGCA 545 629 2043 Antisense
GCACCAGCAGCTCAAACTCAGGAAT 347 315 2059 Antisense
TGAGCAAGTTGTCGAGACCTCCGCT 390 569 2100 Antisense
Sequence Source Affymetrix Proprietary Database