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[176469_s_at]

Description Y37E11AR.A /REP_DB=WormBase Gene ID /WP=CE21543 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 25      6grp_highest_nonorm > 81      6grp_total > 26      4grp_total > 52      6grp_highest_sub > 01_02      6grp_cgc > 14      6grp_high1_sub > 01_02      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 200.7
(-3)
P 		219.1
(3)
P 		206.3
(-1.2)
P 		205.2
(-1.5)
A 		18
B 280.5
(3)
P 		224.3
(0.4)
P 		243.4
(1.3)
P 		149.5
(-3)
A 		131
C 212.5
(0.5)
P 		239.3
(3)
M 		207.6
(-0)
P 		176.1
(-3)
A 		63
avr 231.2
(3) 		227.6
(2.6) 		219.1
(1.7) 		176.9
(-3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 206
1 2 3 4 5 6 range
A 382.8
(3)
P 		257.8
(-0.6)
P 		177.2
(-3)
P 		279.8
(-0)
P 		237.7
(-1.2)
P 		261.8
(-0.5)
P 		206
B 325.3
(3)
P 		319.4
(2.7)
P 		204.5
(-3)
P 		232.1
(-1.6)
P 		254.6
(-0.5)
P 		234.1
(-1.5)
P 		121
C 220.4
(-2.1)
P 		303.6
(3)
P 		249.5
(-0.3)
P 		273.3
(1.2)
P 		205.1
(-3)
P 		238.8
(-0.9)
P 		99
avr 309.5
(3) 		293.6
(2) 		210.4
(-3) 		261.7
(0.1) 		232.5
(-1.7) 		244.9
(-0.9) 		99
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 73.1
(3)
P 		47.6
(-0.5)
P 		53.9
(0.3)
P 		30
(-3)
A 		43
B 89.4
(3)
P 		55.4
(-0.5)
P 		56.4
(-0.4)
P 		31.9
(-3)
A 		58
C 70.3
(2.7)
P 		68.8
(2.5)
M 		72.4
(3)
P 		29.7
(-3)
A 		43
avr 77.6
(3) 		57.3
(0.4) 		60.9
(0.9) 		30.5
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 70.6
(0.6)
P 		91.7
(3)
P 		38.6
(-3)
P 		71
(0.7)
P 		71.7
(0.7)
P 		63.7
(-0.2)
P 		53
B 113.2
(3)
P 		106.3
(2.3)
P 		49.7
(-3)
P 		61.5
(-1.9)
P 		103.4
(2.1)
P 		87.3
(0.6)
P 		64
C 81.7
(1.3)
P 		92.6
(3)
P 		63.5
(-1.6)
P 		55
(-3)
P 		66.4
(-1.2)
P 		79.9
(1)
P 		38
avr 88.5
(1.9) 		96.9
(3) 		50.6
(-3) 		62.5
(-1.5) 		80.5
(0.9) 		77
(0.4) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176469_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19225
Sequence Type Exemplar sequence
Representative Public ID Y37E11AR.A NCBI
Target Description Y37E11AR.A /REP_DB=WormBase Gene ID /WP=CE21543 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068011(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068011 NCBI Caenorhabditis elegans Variable ABnormal morphology family member (vab-2) (vab-2) mRNA, complete cds. 11/11 None
SNAP00000021671 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3761427:3763231:-1 11/11 None
GENEFINDER00000021672 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3761427:3762762:-1 11/11 None
Y37E11AR.6 ENSEMBL cdna:known chromosome:CEL140:IV:3761187:3766823:-1 gene:Y37E11AR.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3761394-3763319(-) 91.52 100.0
Public Domain and Genome References
Gene Title
Gene Symbol vab-2
Ensembl Y37E11AR.6
Entrez Gene 177140 Entrez gene
SwissProt Q9U474 EMBL-EBI
WormBase CE27606 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
48013 ephrin receptor signaling pathway inferred from direct assay QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
30424 axon inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
46875 ephrin receptor binding inferred from direct assay QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68436 Variable abnormal morphology protein 2 [Caenorhabditis elegans] ref|NP_500412.1| Variable ABnormal morphology family member (vab-2) [Caenorhabditis elegans] gb|AAF25647.1| VAB-2 [Caenorhabditis elegans] 1.0E-136
blast AAK68436 Variable abnormal morphology protein 2 [Caenorhabditis elegans] ref|NP_500412.1| Variable ABnormal morphology family member (vab-2) [Caenorhabditis elegans] gb|AAF25647.1| VAB-2 [Caenorhabditis elegans] 1.0E-113
blast CAE65681 Hypothetical protein CBG10748 [Caenorhabditis briggsae] 1.0E-111
blast CAE65681 Hypothetical protein CBG10748 [Caenorhabditis briggsae] 1.0E-100
blast NP_990155 ephrin-B2 [Gallus gallus] gb|AAD53948.1| ephrin-B2 precursor [Gallus gallus] 1.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR001799 EMBL-EBI Ephrin 2.7E-32
Pfam IPR001799 EMBL-EBI Ephrin 3.0E-27
Pfam IPR001799 EMBL-EBI Ephrin 3.0E-27
Sequence
Target Sequence 
>C. ELEGANS:176469_S_AT
tgagcccgaatccgtcgggactggattatcggcctggagtcacttattattttatttcta
cctcaaccggctcccgaaagggtctctacaacgagcaaggcggtctttgtgcgtcccaca
atctgaaaatggtaatccacataactgaccgtaatggagacatcggaccacaccatcacc
gccaccatcacaagaagaccactactaccaccacaacgagtacttccacaagcaccccga
agaccattccgccggtcgtcgagatggacagctcggcggaaaagctgtgggagcagtttt
acgagaaagtgatgcctattgataacacatggccggagattacacgtggcgagcgggtta
cgttgtatcaggggaataagaaggatgaatacgagcaggttccagcggaagttgtcgatt
ttgagattcatgagattggagatggtgggtctagaatctctgtactcatcatctggacgg
ctccgatatgtgctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGCCCGAATCCGTCGGGACTGGA 552 541 269 Antisense
GGATTATCGGCCTGGAGTCACTTAT 183 507 291 Antisense
AACGAGCAAGGCGGTCTTTGTGCGT 237 145 358 Antisense
GTCTTTGTGCGTCCCACAATCTGAA 529 467 371 Antisense
AATGGAGACATCGGACCACACCATC 230 163 421 Antisense
GCCACCATCACAAGAAGACCACTAC 515 279 449 Antisense
TACTACCACCACAACGAGTACTTCC 687 643 471 Antisense
GTGGCGAGCGGGTTACGTTGTATCA 645 489 614 Antisense
GAATACGAGCAGGTTCCAGCGGAAG 264 327 655 Antisense
GAATCTCTGTACTCATCATCTGGAC 387 329 722 Antisense
TCTGGACGGCTCCGATATGTGCTCC 324 607 740 Antisense
Sequence Source Affymetrix Proprietary Database