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[176468_s_at]

Description Y102A11A.G /REP_DB=WormBase Gene ID /WP=CE26479 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 38      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 70      6grp_total > 27      4grp_total > 12      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 435
1 2 3 4 range
A 411.2
(-0.8)
P 		381.1
(-1.3)
P 		274.1
(-3)
P 		642.4
(3)
P 		368
B 387.8
(-1.3)
P 		371.4
(-1.6)
P 		267.7
(-3)
P 		702.9
(3)
P 		435
C 457.4
(-0.2)
P 		346
(-1.9)
P 		271.6
(-3)
P 		669.3
(3)
P 		398
avr 418.8
(-0.8) 		366.2
(-1.6) 		271.1
(-3) 		671.5
(3) 		400

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 377
1 2 3 4 5 6 range
A 541.2
(3)
P 		326.7
(-0.4)
P 		237.1
(-1.8)
P 		164
(-3)
P 		200
(-2.4)
P 		299.5
(-0.8)
P 		377
B 455.9
(3)
P 		364.7
(1)
P 		275.8
(-0.9)
P 		178.3
(-3)
P 		219
(-2.1)
P 		370
(1.1)
P 		278
C 457
(3)
P 		353.6
(0.6)
P 		193.2
(-3)
P 		218.5
(-2.4)
P 		207.3
(-2.7)
P 		396.1
(1.6)
P 		264
avr 484.7
(3) 		348.3
(0.3) 		235.4
(-2) 		186.9
(-3) 		208.8
(-2.6) 		355.2
(0.4) 		298
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 149.7
(3)
P 		82.7
(-2.2)
P 		71.7
(-3)
P 		94
(-1.3)
P 		78
B 123.7
(1.2)
P 		91.7
(-1)
P 		62
(-3)
P 		149.8
(3)
P 		88
C 151.4
(3)
P 		99.5
(-2.5)
P 		94.6
(-3)
P 		112.8
(-1.1)
P 		57
avr 141.6
(3) 		91.3
(-1.6) 		76.1
(-3) 		118.9
(0.9) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 99.8
(1.7)
P 		116.2
(3)
P 		51.6
(-2.2)
P 		41.6
(-3)
P 		60.4
(-1.5)
P 		72.9
(-0.5)
P 		75
B 158.6
(3)
P 		121.4
(1)
P 		67
(-1.9)
P 		47.2
(-3)
P 		89
(-0.7)
P 		138
(1.9)
P 		111
C 169.4
(3)
P 		107.9
(0.1)
P 		49.2
(-2.7)
P 		43.9
(-3)
P 		67.1
(-1.9)
P 		132.6
(1.2)
P 		126
avr 142.6
(3) 		115.2
(1.3) 		55.9
(-2.3) 		44.2
(-3) 		72.2
(-1.3) 		114.5
(1.3) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176468_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19610
Sequence Type Exemplar sequence
Representative Public ID Y102A11A.G NCBI
Target Description Y102A11A.G /REP_DB=WormBase Gene ID /WP=CE26479 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029780(11), NM_001029779(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029780 NCBI Caenorhabditis elegans Y102A11A.2b (Y102A11A.2) mRNA, complete cds. 11/11 None
NM_001029779 NCBI Caenorhabditis elegans Y102A11A.2a (Y102A11A.2) mRNA, complete cds. 11/11 None
SNAP00000043290 ENSEMBL cdna:SNAP chromosome:CEL140:X:2026647:2030974:1 11/11 None
GENEFINDER00000043306 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2026647:2030974:1 11/11 None
Y102A11A.2b ENSEMBL cdna:known chromosome:CEL140:X:2026636:2030974:1 gene:Y102A11A.2 11/11 None
Y102A11A.2a ENSEMBL cdna:known chromosome:CEL140:X:2026647:2030975:1 gene:Y102A11A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2026646-2031327(+) 99.23 100.0
Public Domain and Genome References
Ensembl Y102A11A.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAR85899 Hypothetical protein Y102A11A.2b [Caenorhabditis elegans] ref|NP_001024951.1| Y102A11A.2b [Caenorhabditis elegans] 0.0
blast AAK39314 Hypothetical protein Y102A11A.2a [Caenorhabditis elegans] ref|NP_001024950.1| Y102A11A.2a [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:176468_S_AT
gacaagcatgaattctcttctctctactgtcactgaagaagatcctgattccacttcact
caataatcattcgacttcaactaatcctaaagtaatatttgcgcgattatctactcttca
gccaagtgtcatctctttcatccacgatctggtggacggcatcttatcatctttagataa
aaccgatatttcaagacctactgatactcaacatctta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAAGCATGAATTCTCTTCTCTCT 468 365 1941 Antisense
TCTCTTCTCTCTACTGTCACTGAAG 373 613 1954 Antisense
AGAAGATCCTGATTCCACTTCACTC 255 75 1977 Antisense
TTCCACTTCACTCAATAATCATTCG 317 699 1989 Antisense
AATCATTCGACTTCAACTAATCCTA 269 169 2005 Antisense
TACTCTTCAGCCAAGTGTCATCTCT 515 645 2052 Antisense
ATCTCTTTCATCCACGATCTGGTGG 404 31 2071 Antisense
ATCTGGTGGACGGCATCTTATCATC 274 35 2087 Antisense
TGGACGGCATCTTATCATCTTTAGA 43 549 2093 Antisense
AAAACCGATATTTCAAGACCTACTG 480 129 2119 Antisense
AGACCTACTGATACTCAACATCTTA 114 71 2134 Antisense
Sequence Source Affymetrix Proprietary Database