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[176466_at]

Description Y53G8AL.1 /REP_DB=WormBase Gene ID /WP=CE26162 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 46      4grp_total > 29      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 51.5
(1.6)
A 		64.2
(3)
A 		11.4
(-3)
A 		16.7
(-2.4)
A 		53
B 60
(3)
A 		24.2
(-3)
A 		60.2
(3)
A 		36.9
(-0.9)
A 		36
C 39.1
(-1.7)
A 		35.9
(-2)
A 		21.9
(-3)
A 		104.2
(3)
A 		82
avr 50.2
(2.3) 		41.4
(-0.1) 		31.2
(-3) 		52.6
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 26.4
(-1.2)
A 		25.6
(-1.3)
A 		47.8
(1.3)
A 		10.7
(-3)
A 		11.3
(-2.9)
A 		62.6
(3)
A 		52
B 42.8
(3)
A 		14
(-1.7)
A 		25.6
(0.2)
A 		15.5
(-1.5)
A 		6.3
(-3)
A 		25.1
(0.1)
A 		37
C 46.2
(3)
A 		35.6
(1.4)
A 		13.8
(-2)
A 		46.3
(3)
A 		12.2
(-2.2)
A 		7.3
(-3)
A 		39
avr 38.5
(3) 		25.1
(0.2) 		29.1
(1) 		24.2
(0) 		9.9
(-3) 		31.7
(1.6) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 18.8
(3)
A 		13.9
(1.2)
A 		3
(-2.8)
A 		2.4
(-3)
A 		16
B 19.1
(3)
A 		6
(-3)
A 		14
(0.7)
A 		7.9
(-2.1)
A 		13
C 13
(0.2)
A 		10.3
(-1.4)
A 		7.6
(-3)
A 		17.6
(3)
A 		10
avr 17
(3) 		10.1
(-1.7) 		8.2
(-3) 		9.3
(-2.3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 4.9
(-1.9)
A 		9.1
(0.1)
A 		10.4
(0.7)
A 		2.7
(-3)
A 		3.4
(-2.7)
A 		15.2
(3)
A 		13
B 14.9
(3)
A 		4.6
(-2)
A 		6.2
(-1.2)
A 		4.1
(-2.3)
A 		2.6
(-3)
A 		9.4
(0.3)
A 		12
C 17.1
(3)
A 		10.9
(0.5)
A 		3.5
(-2.6)
A 		9.3
(-0.2)
A 		4
(-2.3)
A 		2.4
(-3)
A 		15
avr 12.3
(3) 		8.2
(0.3) 		6.7
(-0.7) 		5.4
(-1.6) 		3.3
(-3) 		9
(0.8) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176466_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6797
Sequence Type Exemplar sequence
Representative Public ID Y53G8AL.1 NCBI
Target Description Y53G8AL.1 /REP_DB=WormBase Gene ID /WP=CE26162 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065273
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y53G8AL.1 ENSEMBL cdna:known chromosome:CEL140:III:3237189:3241252:1 gene:Y53G8AL.1 None
GENEFINDER00000028028 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3237189:3241252:1 None
NM_065273 NCBI Caenorhabditis elegans Y53G8AL.1 (Y53G8AL.1) mRNA, complete cds. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028025 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3237188-3241252(+) 89.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y53G8AL.1
Entrez Gene 190231 Entrez gene
SwissProt Q9N3H4 EMBL-EBI
WormBase CE32534 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59529 Hypothetical protein Y53G8AL.1 [Caenorhabditis elegans] ref|NP_497674.2| Y53G8AL.1 [Caenorhabditis elegans] 0.0
blast AAF59529 Hypothetical protein Y53G8AL.1 [Caenorhabditis elegans] ref|NP_497674.2| Y53G8AL.1 [Caenorhabditis elegans] 1.0E-131
blast CAE72964 Hypothetical protein CBG20299 [Caenorhabditis briggsae] 4.0E-74
blast CAE72964 Hypothetical protein CBG20299 [Caenorhabditis briggsae] 1.0E-63
Sequence
Target Sequence 
>C. ELEGANS:176466_AT
ggtgaagctggtgccgaatggtgacgtggtacaagccgccgcagaggacagaatgtcaag
tcatttgaaatcacatgtgaatacggcttcaggaaaacctcatatcacttatcagaaatt
tgacagaaatcaatttcagaattattatttggttccgcgtagtgcgccggtgaggcaggc
ggccaccggccccggccggcgcccacatggaaaatcaaatttatcgattttcggcagatt
tttatcgatttttcgaatttttcttgaatttaggagcaacagtatgattattcttatagg
aattcaaatgcttgctaaaatttccgaaaaaaatataaaatttaccggaaaatcaatatt
tttgagaaaaatcgagagaaagtatcgattttcggctgatttttatcgagttttcgattt
tttaaagaaatttgcgtatccaatccgccgttacttctcaccaccaatgaaacgccgctc
gaaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGAAGCTGGTGCCGAATGGTGAC 597 499 1878 Antisense
GAATGGTGACGTGGTACAAGCCGCC 429 331 1893 Antisense
ACAAGCCGCCGCAGAGGACAGAATG 642 111 1908 Antisense
GAATACGGCTTCAGGAAAACCTCAT 144 323 1956 Antisense
GAAAACCTCATATCACTTATCAGAA 295 355 1970 Antisense
TATTATTTGGTTCCGCGTAGTGCGC 464 659 2020 Antisense
CGTAGTGCGCCGGTGAGGCAGGCGG 686 243 2035 Antisense
AAGTATCGATTTTCGGCTGATTTTT 651 155 2257 Antisense
AAATTTGCGTATCCAATCCGCCGTT 312 115 2305 Antisense
CGTTACTTCTCACCACCAATGAAAC 610 247 2326 Antisense
CACCAATGAAACGCCGCTCGAAAAG 509 201 2339 Antisense
Sequence Source Affymetrix Proprietary Database