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[176465_at]

Description Y47D7A.11 /REP_DB=WormBase Gene ID /WP=CE22062 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 15      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 5.7
(-3)
A 		17.1
(-0)
A 		12.2
(-1.3)
A 		28.6
(3)
A 		23
B 55.7
(3)
A 		11.4
(-2.2)
A 		18.9
(-1.4)
A 		5
(-3)
A 		51
C 28.2
(-1.2)
A 		13.2
(-3)
A 		15.6
(-2.7)
A 		64.4
(3)
A 		51
avr 29.9
(2.1) 		13.9
(-3) 		15.6
(-2.5) 		32.7
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 43.5
(3)
A 		7.5
(-2.2)
A 		1.8
(-3)
A 		7.8
(-2.1)
A 		8
(-2.1)
A 		40.8
(2.6)
A 		42
B 6.5
(-3)
A 		32.1
(1.2)
A 		8.7
(-2.6)
A 		6.8
(-3)
A 		43.2
(3)
A 		22.1
(-0.4)
A 		37
C 38.2
(1.2)
A 		26.5
(-0.3)
A 		34.5
(0.7)
A 		50.5
(2.7)
A 		52.5
(3)
A 		5
(-3)
A 		48
avr 29.4
(1.4) 		22
(-0.9) 		15
(-3) 		21.7
(-0.9) 		34.6
(3) 		22.6
(-0.7) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 2.1
(-3)
A 		3.7
(1.6)
A 		3.2
(0.1)
A 		4.2
(3)
A 		2
B 17.8
(3)
A 		2.8
(-2.4)
A 		4.4
(-1.8)
A 		1.1
(-3)
A 		17
C 9.3
(1.6)
A 		3.8
(-3)
A 		5.4
(-1.6)
A 		10.9
(3)
A 		7
avr 9.7
(3) 		3.4
(-3) 		4.3
(-2.1) 		5.4
(-1.1) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 8
(1.8)
A 		2.7
(-1.5)
A 		0.4
(-3)
A 		2
(-2)
A 		2.4
(-1.7)
A 		9.9
(3)
A 		10
B 2.3
(-2.8)
A 		10.7
(0.4)
A 		2.1
(-2.9)
A 		1.8
(-3)
A 		17.6
(3)
A 		8.2
(-0.6)
A 		16
C 14.2
(1.9)
A 		8.1
(-0.5)
A 		8.8
(-0.2)
A 		10.1
(0.3)
A 		17
(3)
A 		1.7
(-3)
A 		15
avr 8.2
(0.1) 		7.2
(-0.6) 		3.8
(-3) 		4.6
(-2.4) 		12.3
(3) 		6.6
(-1) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176465_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15872
Sequence Type Exemplar sequence
Representative Public ID Y47D7A.11 NCBI
Target Description Y47D7A.11 /REP_DB=WormBase Gene ID /WP=CE22062 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071823
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000043274 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4427641:4428100:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071823 8/11 Cross Hyb Matching Probes None
SNAP00000043267 8/11 Cross Hyb Matching Probes None
Y47D7A.11 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4427640-4428100(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60632 Hypothetical protein Y47D7A.11 [Caenorhabditis elegans] ref|NP_504224.2| Y47D7A.11 [Caenorhabditis elegans] 3.0E-28
blast CAE56034 Hypothetical protein CBG23599 [Caenorhabditis briggsae] 2.0E-21
blast AAF60636 Hypothetical protein Y47D7A.7 [Caenorhabditis elegans] ref|NP_504218.1| Y47D7A.7 [Caenorhabditis elegans] 2.0E-18
Sequence
Target Sequence 
>C. ELEGANS:176465_AT
gcccagaagccatcgtattctgctccaccaccaccagctccatccgtctactcctccagc
tcgttcagcgataacgaggtagcatcggactctgagtacaccactgcttctccaaattct
gagtgtgagttggagcagcaaattaatcaccgcaaacgcgccaaggcacgtaccgcccac
aatcgcaaattccaacgtcgtgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCCAGAAGCCATCGTATTCTGCTC 239 287 184 Antisense
CAGAAGCCATCGTATTCTGCTCCAC 220 205 187 Antisense
CCTCCAGCTCGTTCAGCGATAACGA 192 267 236 Antisense
GATAACGAGGTAGCATCGGACTCTG 456 405 253 Antisense
AGGTAGCATCGGACTCTGAGTACAC 535 57 260 Antisense
ATCGGACTCTGAGTACACCACTGCT 325 35 267 Antisense
TTCTCCAAATTCTGAGTGTGAGTTG 617 693 291 Antisense
GTTGGAGCAGCAAATTAATCACCGC 643 435 312 Antisense
ATTAATCACCGCAAACGCGCCAAGG 235 11 325 Antisense
CCCACAATCGCAAATTCCAACGTCG 538 255 359 Antisense
CAATCGCAAATTCCAACGTCGTGCT 134 183 363 Antisense
Sequence Source Affymetrix Proprietary Database