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[176464_at]

Description Y39G10AR.D /REP_DB=WormBase Gene ID /WP=CE26522 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 83      4grp_total > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 6.7
(-0.4)
A 		5
(-3)
A 		8.9
(3)
A 		6.8
(-0.2)
A 		4
B 6.5
(1.9)
A 		7.3
(3)
A 		5.5
(0.6)
A 		2.8
(-3)
A 		5
C 5.7
(-2)
A 		4.7
(-2.4)
A 		3.1
(-3)
A 		18.7
(3)
A 		16
avr 6.3
(-2) 		5.7
(-3) 		5.8
(-2.8) 		9.4
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 5.9
(-2.6)
A 		3.4
(-3)
A 		11.3
(-1.8)
A 		29.2
(0.8)
A 		44
(3)
A 		8.1
(-2.3)
A 		41
B 6.4
(-1.2)
A 		3
(-3)
A 		6.3
(-1.3)
A 		6.7
(-1.1)
A 		6.2
(-1.3)
A 		14.4
(3)
A 		11
C 2.9
(-3)
A 		3.3
(-2.7)
A 		10.1
(3)
A 		9.5
(2.5)
A 		8.1
(1.3)
A 		5.1
(-1.2)
A 		7
avr 5.1
(-2.3) 		3.2
(-3) 		9.2
(-0.8) 		15.1
(1.4) 		19.4
(3) 		9.2
(-0.8) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 2.4
(3)
A 		1.1
(-2.6)
A 		2.3
(2.6)
A 		1
(-3)
A 		1
B 2.1
(3)
A 		1.8
(1.8)
A 		1.3
(-0.2)
A 		0.6
(-3)
A 		2
C 1.9
(-0.6)
A 		1.4
(-2.1)
A 		1.1
(-3)
A 		3.1
(3)
A 		2
avr 2.1
(3) 		1.4
(-3) 		1.6
(-1.3) 		1.6
(-1.3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.1
(-3)
A 		1.2
(-3)
A 		2.5
(-2.3)
A 		7.4
(0.1)
A 		13.3
(3)
A 		2
(-2.6)
A 		12
B 2.2
(-1.4)
A 		1
(-3)
A 		1.5
(-2.3)
A 		1.8
(-1.9)
A 		2.5
(-1)
A 		5.4
(3)
A 		4
C 1.1
(-2.6)
A 		1
(-3)
A 		2.6
(3)
A 		1.9
(0.4)
A 		2.6
(3)
A 		1.7
(-0.4)
A 		2
avr 1.5
(-2.5) 		1.1
(-3) 		2.2
(-1.7) 		3.7
(0.1) 		6.1
(3) 		3
(-0.7) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176464_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18689
Sequence Type Exemplar sequence
Representative Public ID Y39G10AR.D NCBI
Target Description Y39G10AR.D /REP_DB=WormBase Gene ID /WP=CE26522 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058568
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000028481 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2376615:2377563:-1 10/11 None
SNAP00000028469 ENSEMBL cdna:SNAP chromosome:CEL140:I:2377090:2377563:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058568 3/11 Cross Hyb Matching Probes None
Y39G10AR.17 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2377089-2377563(-) 93.25 100.0
Sequence
Target Sequence 
>C. ELEGANS:176464_AT
caccacaagctccattctctggagattgctggcgagcacagccagcggctccggttccgg
cctccgtgccagtcagttcggcaccaccaccatcagtggttgttaatgtacaaagtactc
tattctctgctctcgggcttcatcacaagcctccacctcctcctcctccacctcctcctc
cgacaacttcttctactactacatctcacattccaccaccacctcctcctccgcttccgt
tctcttcggctccgccaccaccgccaccgcttccgatggtcgctgctggtccgtctccgc
cgagctttgttcctcctcctccgcctccgaatccgaatcagaatccgtctatcgttttgt
caccatcggcggtaaccggaggcggcggctaccggcatcgtgtcaatcagtttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACCACAAGCTCCATTCTCTGGAGA 343 203 38 Antisense
TTCTCTGGAGATTGCTGGCGAGCAC 562 691 52 Antisense
TTGCTGGCGAGCACAGCCAGCGGCT 100 679 63 Antisense
ACCACCACCATCAGTGGTTGTTAAT 17 87 120 Antisense
GTACAAAGTACTCTATTCTCTGCTC 423 461 145 Antisense
TCCGAATCAGAATCCGTCTATCGTT 305 595 369 Antisense
CAGAATCCGTCTATCGTTTTGTCAC 123 205 376 Antisense
CCGTCTATCGTTTTGTCACCATCGG 472 263 382 Antisense
TTTGTCACCATCGGCGGTAACCGGA 656 639 393 Antisense
CACCATCGGCGGTAACCGGAGGCGG 234 201 398 Antisense
TACCGGCATCGTGTCAATCAGTTTC 675 645 427 Antisense
Sequence Source Affymetrix Proprietary Database