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[176463_at]

Description Y47D7A.14 /REP_DB=WormBase Gene ID /WP=CE26108 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 21      6grp_total > 31      4grp_total > 63      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 265.6
(2.3)
P 		205.4
(-3)
A 		273.1
(3)
P 		221.8
(-1.5)
A 		68
B 283.8
(3)
P 		159.9
(-3)
A 		271.6
(2.4)
P 		165.3
(-2.7)
A 		124
C 253.1
(2.2)
P 		157.3
(-1.3)
A 		273.2
(3)
P 		113.1
(-3)
A 		160
avr 267.5
(2.7) 		174.2
(-2.6) 		272.6
(3) 		166.7
(-3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 255
1 2 3 4 5 6 range
A 279.1
(-0.2)
P 		352.9
(1.9)
P 		392.3
(3)
M 		325.7
(1.1)
P 		181.3
(-2.9)
M 		177.2
(-3)
P 		215
B 313.9
(2.4)
P 		327.8
(3)
P 		311.5
(2.3)
P 		270.3
(0.6)
P 		201.7
(-2.2)
P 		181.8
(-3)
P 		146
C 256.6
(-0.4)
P 		358.7
(2)
P 		379.5
(2.5)
P 		399.7
(3)
P 		233
(-0.9)
P 		145.2
(-3)
M 		255
avr 283.2
(0.6) 		346.5
(2.5) 		361.1
(3) 		331.9
(2.1) 		205.3
(-1.8) 		168.1
(-3) 		193
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 96.7
(3)
P 		44.6
(-1.9)
A 		71.4
(0.6)
P 		32.5
(-3)
A 		64
B 90.5
(3)
P 		39.5
(-2.5)
A 		62.9
(0)
P 		35.2
(-3)
A 		55
C 83.8
(2.1)
P 		45.2
(-0.9)
A 		95.2
(3)
P 		19.1
(-3)
A 		76
avr 90.3
(3) 		43.1
(-1.6) 		76.5
(1.7) 		28.9
(-3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 51.4
(-2.4)
P 		125.5
(3)
P 		85.4
(0.1)
M 		82.6
(-0.1)
P 		54.7
(-2.2)
M 		43.1
(-3)
P 		82
B 109.2
(3)
P 		109.1
(3)
P 		75.6
(-1.9)
P 		71.6
(-2.4)
P 		81.9
(-1)
P 		67.8
(-3)
P 		41
C 95.1
(1.6)
P 		109.5
(3)
P 		96.6
(1.7)
P 		80.4
(0.1)
P 		75.4
(-0.4)
P 		48.6
(-3)
M 		61
avr 85.2
(0.1) 		114.7
(3) 		85.9
(0.2) 		78.2
(-0.6) 		70.7
(-1.3) 		53.2
(-3) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176463_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15038
Sequence Type Exemplar sequence
Representative Public ID Y47D7A.14 NCBI
Target Description Y47D7A.14 /REP_DB=WormBase Gene ID /WP=CE26108 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071826
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y47D7A.14 ENSEMBL cdna:known chromosome:CEL140:V:4442924:4446020:-1 gene:Y47D7A.14 None
NM_071826 NCBI Caenorhabditis elegans Y47D7A.14 (Y47D7A.14) mRNA, complete cds. None
SNAP00000043272 ENSEMBL cdna:SNAP chromosome:CEL140:V:4443337:4446029:-1 None
GENEFINDER00000043275 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4438976:4446020:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043271 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4437648-4446020(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47D7A.14
Entrez Gene 178842 Entrez gene
WormBase CE36960 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.11254.1.S1_S_AT similar to Protein C20orf54 homolog cfa
DROSOPHILA_2:1634197_AT dm
DROSGENOME1:142134_AT dm
CHICKEN:GGA.6042.1.S1_AT similar to chromosome 20 open reading frame 54 gga
HG-U133_PLUS_2:233451_AT chromosome 20 open reading frame 54 hs
HG-U133B:233451_AT chromosome 20 open reading frame 54 hs
U133_X3P:HS.283865.0.S1_3P_AT chromosome 20 open reading frame 54 hs
U133_X3P:HS.105761.0.A1_3P_AT chromosome 20 open reading frame 54 hs
HG-U133_PLUS_2:228236_AT chromosome 20 open reading frame 54 hs
HG-U133B:228236_AT chromosome 20 open reading frame 54 hs
HG-U95E:89749_AT chromosome 20 open reading frame 54 hs
MG-U74BV2:111008_AT RIKEN cDNA 2310046K01 gene mm
MG-U74CV2:166376_F_AT RIKEN cDNA 2310046K01 gene mm
MOE430A:1429292_A_AT RIKEN cDNA 2310046K01 gene mm
MOUSE430A_2:1429292_A_AT RIKEN cDNA 2310046K01 gene mm
MOUSE430_2:1429292_A_AT RIKEN cDNA 2310046K01 gene mm
RG-U34A:RC_AA891844_AT similar to RIKEN cDNA 2310046K01 (predicted) rn
RAE230A:1377088_AT similar to RIKEN cDNA 2310046K01 (predicted) rn
RAT230_2:1377088_AT similar to RIKEN cDNA 2310046K01 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast ABA61861 Hypothetical protein Y47D7A.16 [Caenorhabditis elegans] 1.0E-155
blast CAE56775 Hypothetical protein CBG24581 [Caenorhabditis briggsae] 1.0E-109
blast AAK84608 Hypothetical protein Y47D7A.14 [Caenorhabditis elegans] 1.0E-93
blast CAE56776 Hypothetical protein CBG24582 [Caenorhabditis briggsae] 1.0E-92
blast NP_504227 Y47D7A.14 [Caenorhabditis elegans] 3.0E-92
blast AAK84608 Hypothetical protein Y47D7A.14 [Caenorhabditis elegans] 3.0E-92
blast CAE56776 Hypothetical protein CBG24582 [Caenorhabditis briggsae] 9.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR009357 EMBL-EBI Protein of unknown function DUF1011 8.3E-67
Pfam IPR009357 EMBL-EBI Protein of unknown function DUF1011 8.3E-67
Pfam IPR009357 EMBL-EBI Protein of unknown function DUF1011 4.0E-68
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504227.2 5 19-41,51-73,80-102,107-129,150-172
Y47D7A.14 5 19-41,51-73,80-102,107-129,150-172
SNAP00000043272 5 17-39,54-76,83-105,110-132,153-175
GENEFINDER00000043275 11 20-42,52-74,81-103,113-135,148-170,180-202,209-231,269-291,406-428,443-465,478-500
Sequence
Target Sequence 
>C. ELEGANS:176463_AT
gaacacctaccactatgcggttacattatccaatgtgatatctccactggcatcgtatct
acaattctttgtgaaaatccgaagtctaccaattctagcatttctaacattatgctcttc
gctaacaactgcagtaattatctatttagctgcactatctccaaattggatatttaattc
tgaaactgcggatagcaagttccttgatagcagctggactgcactcatatcttcgtgtca
tgtttgccgcattattacgggaaggaaatcagaaggagtcgaggttattctggtgtggag
cgtttatacagatcggatcgttcactggttctgcaataatgtttccattggtaaatgtct
ggaaactcttccactctgcaccatcatgtcgattttttttttcaaattggagattcaaac
ttttggggctatgcggcgtcggatattttggcaaccgacaattgatttgaaaaattgcca
aattttcagcaagcaacggtatatactttcttttttcctctcaatataca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACACCTACCACTATGCGGTTACA 578 351 1209 Antisense
ATATCTCCACTGGCATCGTATCTAC 150 21 1246 Antisense
ACATTATGCTCTTCGCTAACAACTG 300 105 1315 Antisense
TTAGCTGCACTATCTCCAAATTGGA 245 681 1354 Antisense
TGGACTGCACTCATATCTTCGTGTC 250 549 1423 Antisense
TTCGTGTCATGTTTGCCGCATTATT 489 695 1440 Antisense
GATCGTTCACTGGTTCTGCAATAAT 371 417 1524 Antisense
ATGTCTGGAAACTCTTCCACTCTGC 318 49 1563 Antisense
CACTCTGCACCATCATGTCGATTTT 89 199 1580 Antisense
GCTATGCGGCGTCGGATATTTTGGC 469 303 1636 Antisense
CTTTCTTTTTTCCTCTCAATATACA 219 223 1714 Antisense
Sequence Source Affymetrix Proprietary Database