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[176461_s_at]

Description Y59H11AM.B /REP_DB=WormBase Gene ID /WP=CE25519 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 88      4grp_total > 26      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 2.1
(-2.8)
A 		4
(-2.5)
A 		0.9
(-3)
A 		36.2
(3)
A 		35
B 6.9
(1)
A 		10
(3)
A 		0.6
(-3)
A 		2.2
(-2)
A 		9
C 1.1
(-3)
A 		19
(3)
A 		11
(0.3)
A 		1.7
(-2.8)
A 		18
avr 3.4
(-3) 		11
(1.6) 		4.2
(-2.5) 		13.4
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 230
1 2 3 4 5 6 range
A 1.5
(-3)
A 		0.6
(-3)
A 		0.4
(-3)
A 		13.3
(-2.6)
A 		85.3
(-0.5)
P 		203.7
(3)
P 		203
B 2.6
(-3)
A 		0.7
(-3)
A 		1.4
(-3)
A 		14.6
(-2.6)
A 		123.5
(0.2)
P 		230.1
(3)
P 		229
C 3.2
(-2.9)
A 		0.5
(-3)
A 		1.3
(-3)
A 		4.4
(-2.9)
A 		150.3
(1.8)
P 		188.6
(3)
P 		188
avr 2.4
(-2.9) 		0.6
(-3) 		1
(-3) 		10.8
(-2.7) 		119.7
(0.5) 		207.5
(3) 		207
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.8
(-2.3)
A 		0.9
(-2.2)
A 		0.2
(-3)
A 		5.3
(3)
A 		5
B 2.2
(2.3)
A 		2.5
(3)
A 		0.1
(-3)
A 		0.5
(-2)
A 		2
C 0.4
(-2.9)
A 		5.5
(3)
A 		3.8
(1)
A 		0.3
(-3)
A 		5
avr 1.1
(-3) 		3
(3) 		1.4
(-2.1) 		2
(-0.2) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 0.3
(-3)
A 		0.2
(-3)
A 		0.1
(-3)
A 		3.4
(-2.6)
A 		25.7
(0.1)
P 		49.6
(3)
P 		50
B 0.9
(-3)
A 		0.2
(-3)
A 		0.4
(-3)
A 		3.9
(-2.7)
A 		50.2
(0.5)
P 		85.8
(3)
P 		86
C 1.2
(-2.9)
A 		0.1
(-3)
A 		0.3
(-3)
A 		0.9
(-2.9)
A 		48.6
(1.6)
P 		63.1
(3)
P 		63
avr 0.8
(-2.9) 		0.2
(-3) 		0.3
(-3) 		2.7
(-2.8) 		41.5
(0.8) 		66.2
(3) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176461_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19088
Sequence Type Exemplar sequence
Representative Public ID Y59H11AM.B NCBI
Target Description Y59H11AM.B /REP_DB=WormBase Gene ID /WP=CE25519 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069060(11), NM_069061(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069060 NCBI Caenorhabditis elegans Y59H11AM.3 (Y59H11AM.3) mRNA, complete cds. 11/11 None
NM_069061 NCBI Caenorhabditis elegans Y59H11AM.2 (Y59H11AM.2) mRNA, complete cds. 11/11 None
SNAP00000029844 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8563586:8566151:-1 11/11 None
SNAP00000029845 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8564974:8568158:1 11/11 None
GENEFINDER00000029848 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8563586:8564579:-1 11/11 None
GENEFINDER00000029850 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8564679:8568158:1 11/11 None
Y59H11AM.3 ENSEMBL cdna:known chromosome:CEL140:IV:8563586:8564579:-1 gene:Y59H11AM.3 11/11 None
Y59H11AM.2 ENSEMBL cdna:known chromosome:CEL140:IV:8567165:8568158:1 gene:Y59H11AM.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8567170-8568164(+) 100.0 100.0
chrIV:8563591-8564585(-) 100.0 100.0
chrII:4832800-4863391(-) 91.47 91.47
Public Domain and Genome References
Gene Title

Ensembl Y59H11AM.3
Y59H11AM.2
Entrez Gene 177661 Entrez gene
177662 Entrez gene
SwissProt Q95NX4 EMBL-EBI
WormBase CE25519 Wormbase
CE25519 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68541 Hypothetical protein Y59H11AM.3 [Caenorhabditis elegans] gb|AAK68540.1| Hypothetical protein Y59H11AM.2 [Caenorhabditis elegans] ref|NP_501462.1| Y59H11AM.2 [Caenorhabditis elegans] ref|NP_501461.1| Y59H11AM.3 [Caenorhabditis elegans] 1.0E-174
blast CAE72573 Hypothetical protein CBG19760 [Caenorhabditis briggsae] 1.0E-166
Protein Domains
Database ID Description E-Value
Pfam IPR001763 EMBL-EBI Rhodanese-like 5.4E-9
Pfam IPR001763 EMBL-EBI Rhodanese-like 5.4E-9
Pfam IPR001763 EMBL-EBI Rhodanese-like 5.4E-9
Pfam IPR001763 EMBL-EBI Rhodanese-like 5.4E-9
Sequence
Target Sequence 
>C. ELEGANS:176461_S_AT
gattgggtgtattcaacggagatcatttggtcatctatggacgtggaaaagatggtggta
tggctgctgcttctcgtgcttactggacattcagatactatggttatactaccgtatctg
tcttgaacggtggtattgaagcattcaaacttgcccaaggtgtcgttcaatccggtgaga
gcatgatctcatctggaaactatgaagctaaatcggtcgacaacaacattcttgccaaga
tggctgatattccattcgataacttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTGGGTGTATTCAACGGAGATCA 51 435 299 Antisense
AACGGAGATCATTTGGTCATCTATG 447 143 313 Antisense
TCATTTGGTCATCTATGGACGTGGA 240 619 321 Antisense
ATGGTTATACTACCGTATCTGTCTT 473 51 398 Antisense
GTATCTGTCTTGAACGGTGGTATTG 276 455 412 Antisense
TGTCGTTCAATCCGGTGAGAGCATG 348 543 459 Antisense
AGCATGATCTCATCTGGAAACTATG 113 79 478 Antisense
AACTATGAAGCTAAATCGGTCGACA 56 139 496 Antisense
TCGGTCGACAACAACATTCTTGCCA 162 607 511 Antisense
AACATTCTTGCCAAGATGGCTGATA 623 137 523 Antisense
GGCTGATATTCCATTCGATAACTTG 562 539 540 Antisense
Sequence Source Affymetrix Proprietary Database