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[176460_at]

Description Y59H11AM.A /REP_DB=WormBase Gene ID /WP=CE25518 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 95      4grp_total > 32      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 5.8
(-2.9)
A 		4.8
(-3)
A 		54.8
(3)
A 		6.4
(-2.8)
A 		50
B 7.2
(-3)
A 		8
(-2.9)
A 		44.6
(3)
A 		8.1
(-2.9)
A 		37
C 5.4
(-3)
A 		10
(-2.6)
A 		7.4
(-2.8)
A 		78.1
(3)
A 		73
avr 6.1
(-3) 		7.6
(-2.7) 		35.6
(3) 		30.9
(2) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 8.8
(-2.7)
A 		17.9
(-1.8)
A 		6.7
(-2.9)
A 		5.6
(-3)
A 		68.9
(3)
A 		19.6
(-1.7)
A 		63
B 7.7
(-3)
A 		7.9
(-3)
A 		15.4
(-1.8)
A 		28.7
(0.2)
A 		47.3
(3)
A 		42.2
(2.2)
A 		40
C 5.4
(-3)
A 		44.7
(0.8)
A 		7.8
(-2.8)
A 		67.4
(3)
A 		23.1
(-1.3)
A 		44.6
(0.8)
A 		62
avr 7.3
(-3) 		23.5
(-0.5) 		10
(-2.6) 		33.9
(1.1) 		46.4
(3) 		35.5
(1.3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.1
(-2.5)
A 		1
(-3)
A 		14.3
(3)
A 		0.9
(-3)
A 		13
B 2.3
(-2.6)
A 		2
(-2.8)
A 		10.3
(3)
A 		1.7
(-3)
A 		9
C 1.8
(-3)
A 		2.9
(-2.4)
A 		2.6
(-2.6)
A 		13.2
(3)
A 		11
avr 2.1
(-2.9) 		2
(-3) 		9.1
(3) 		5.3
(-0.2) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 1.6
(-2.9)
A 		6.4
(-1.5)
A 		1.5
(-3)
A 		1.4
(-3)
A 		20.8
(3)
A 		4.8
(-1.9)
A 		19
B 2.7
(-3)
A 		2.6
(-3)
A 		3.7
(-2.6)
A 		7.6
(-1.2)
A 		19.2
(3)
A 		15.7
(1.7)
A 		17
C 2
(-3)
A 		13.6
(2.4)
A 		2
(-3)
A 		13.6
(2.4)
A 		7.5
(-0.4)
A 		14.9
(3)
A 		13
avr 2.1
(-3) 		7.5
(-0.6) 		2.4
(-2.9) 		7.5
(-0.6) 		15.8
(3) 		11.8
(1.2) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176460_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19095
Sequence Type Exemplar sequence
Representative Public ID Y59H11AM.A NCBI
Target Description Y59H11AM.A /REP_DB=WormBase Gene ID /WP=CE25518 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069062(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069062 NCBI Caenorhabditis elegans Y59H11AM.4 (Y59H11AM.4) mRNA, complete cds. 11/11 None
SNAP00000029846 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8569175:8569963:-1 11/11 None
Y59H11AM.4 ENSEMBL cdna:known chromosome:CEL140:IV:8569175:8569963:-1 gene:Y59H11AM.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000029851 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8569180-8569969(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y59H11AM.4
Entrez Gene 190426 Entrez gene
SwissProt Q95XU8 EMBL-EBI
WormBase CE25518 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68542 Hypothetical protein Y59H11AM.4 [Caenorhabditis elegans] ref|NP_501463.1| Y59H11AM.4 [Caenorhabditis elegans] 2.0E-57
blast AAK68542 Hypothetical protein Y59H11AM.4 [Caenorhabditis elegans] ref|NP_501463.1| Y59H11AM.4 [Caenorhabditis elegans] 1.0E-55
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501463.1 1 4-22
Y59H11AM.4 1 4-22
SNAP00000029846 1 4-22
Sequence
Target Sequence 
>C. ELEGANS:176460_AT
gatcgtcattatcatatcaatcatcggattctcgtttatgtttccaacttttactctgtg
ctccaagaaaaataaatattcgagtaattccaaaaatccgtctacaatgtcaagaaaacg
tgtcaagaggcctgctccgcaagtttcttatactccgattgaagtaccacaatcaaagca
agaaactgaaggaaaggatggaggaaacgttgaaggactaaaggaagaagttccaaataa
aaacttatcaaaagagaaagggaagcctatttccaaagaaaaaacaggggaaaaggagaa
gaaagagaaaaagaaggaagcgacacagaaaaagcaaaaatctgttcgaaagactgcaaa
accgaaaaacgaggaaaaagatgctgaagcccctgttgaaaatgatgataagaaaataag
tgaagaaggaatcaataaaaccgacaagacggaagagcctgaactcgagaaaaagaaatc
tgaattgagtgattcaaagaaggaaagactccgcgaagatgataca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCGTCATTATCATATCAATCATC 126 419 15 Antisense
ATCATCGGATTCTCGTTTATGTTTC 495 29 34 Antisense
ATGTTTCCAACTTTTACTCTGTGCT 233 47 52 Antisense
AACTTTTACTCTGTGCTCCAAGAAA 685 137 60 Antisense
GTAATTCCAAAAATCCGTCTACAAT 344 461 98 Antisense
AAAACGTGTCAAGAGGCCTGCTCCG 437 131 129 Antisense
CTCCGCAAGTTTCTTATACTCCGAT 264 227 149 Antisense
TATACTCCGATTGAAGTACCACAAT 477 659 163 Antisense
GATGCTGAAGCCCCTGTTGAAAATG 319 413 394 Antisense
AAGACGGAAGAGCCTGAACTCGAGA 176 153 460 Antisense
GGAAAGACTCCGCGAAGATGATACA 691 527 516 Antisense
Sequence Source Affymetrix Proprietary Database