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[176459_at]

Description Y102A11A.D /REP_DB=WormBase Gene ID /WP=CE26476 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 42      6grp_highest_nonorm > 43      6grp_total > 20      4grp_total > 49      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2038
1 2 3 4 range
A 25.4
(-3)
A 		1717.5
(3)
P 		1673.6
(2.8)
P 		35.3
(-3)
A 		1692
B 25.8
(-2.9)
A 		1748.2
(3)
P 		1524.2
(2.2)
P 		1.4
(-3)
A 		1747
C 28
(-3)
A 		1911.2
(2.6)
P 		2039.7
(3)
P 		36.1
(-3)
A 		2012
avr 26.4
(-3) 		1792.3
(3) 		1745.8
(2.8) 		24.3
(-3) 		1768

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1124
1 2 3 4 5 6 range
A 639
(-2)
P 		1511.6
(3)
P 		1514.5
(3)
P 		1432.1
(2.5)
P 		1082.8
(0.5)
P 		466.3
(-3)
P 		1048
B 929.1
(-1.9)
P 		1590.5
(3)
P 		1503.8
(2.4)
P 		1177.2
(-0.1)
P 		1378
(1.4)
P 		784.4
(-3)
P 		806
C 989.1
(-0.5)
P 		1561.2
(3)
P 		1054.4
(-0.1)
P 		1226.3
(0.9)
P 		1222.6
(0.9)
P 		589.1
(-3)
P 		972
avr 852.4
(-1.5) 		1554.4
(3) 		1357.6
(1.7) 		1278.5
(1.2) 		1227.8
(0.9) 		613.3
(-3) 		941
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 711
1 2 3 4 range
A 9.3
(-2.9)
A 		372.8
(2.1)
P 		437.5
(3)
P 		5.2
(-3)
A 		432
B 8.2
(-2.9)
A 		431.8
(3)
P 		353.2
(1.9)
P 		0.3
(-3)
A 		432
C 9.3
(-3)
A 		549.5
(1.6)
P 		710.9
(3)
P 		6.1
(-3)
A 		705
avr 8.9
(-2.9) 		451.4
(2.4) 		500.5
(3) 		3.9
(-3) 		497

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 446
1 2 3 4 5 6 range
A 117.8
(-2.9)
P 		537.6
(3)
P 		329.8
(0.1)
P 		363.2
(0.5)
P 		326.7
(0)
P 		113.5
(-3)
P 		424
B 323.3
(-2.3)
P 		529.4
(2.3)
P 		365.2
(-1.4)
P 		311.8
(-2.6)
P 		559.9
(3)
P 		292.5
(-3)
P 		267
C 366.6
(0.6)
P 		476.4
(3)
P 		268.4
(-1.5)
P 		246.6
(-1.9)
P 		395.6
(1.3)
P 		197.2
(-3)
P 		279
avr 269.2
(-1.7) 		514.5
(3) 		321.1
(-0.7) 		307.2
(-1) 		427.4
(1.3) 		201.1
(-3) 		313
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176459_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19615
Sequence Type Exemplar sequence
Representative Public ID Y102A11A.D NCBI
Target Description Y102A11A.D /REP_DB=WormBase Gene ID /WP=CE26476 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075973(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075973 NCBI Caenorhabditis elegans Y102A11A.5 (Y102A11A.5) mRNA, complete cds. 11/11 None
SNAP00000043291 ENSEMBL cdna:SNAP chromosome:CEL140:X:2031037:2031487:-1 11/11 None
GENEFINDER00000043299 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2031037:2031487:-1 11/11 None
Y102A11A.5 ENSEMBL cdna:known chromosome:CEL140:X:2030945:2031502:-1 gene:Y102A11A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2031036-2031487(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y102A11A.5
Entrez Gene 180516 Entrez gene
SwissProt Q95XK0 EMBL-EBI
WormBase CE26476 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39311 Hypothetical protein Y102A11A.5 [Caenorhabditis elegans] ref|NP_508374.1| Y102A11A.5 [Caenorhabditis elegans] 4.0E-75
blast CAE58917 Hypothetical protein CBG02176 [Caenorhabditis briggsae] 1.0E-64
blast AAF64253 novel immunogenic protein NIP-3 [Onchocerca volvulus] 2.0E-12
Sequence
Target Sequence 
>C. ELEGANS:176459_AT
tctcttcagctgcttttgctttgtgctttcattggacttgtttctacacaatggaatctc
gagtgtaaaattcaagtgaaattccgtaatgatgcgcacaaaaagattcgtatcgatctt
ctcgtcccatcactttctatcatgtctgacccagttattcttgacgcgtggaagcacgag
aaaagtgttcatatcaagggaaaaaactgcgagcagaagccatgggtattcatgatctac
ggatggcaagacgacaaatgggttctcaagaagaagactcaatccaagttcactggaaac
ggatggttcctgacagctgttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCTTCAGCTGCTTTTGCTTTGTG 202 613 19 Antisense
CTGCTTTTGCTTTGTGCTTTCATTG 13 239 28 Antisense
GCTTTCATTGGACTTGTTTCTACAC 177 305 43 Antisense
GAAATTCCGTAATGATGCGCACAAA 169 363 96 Antisense
AAAAGATTCGTATCGATCTTCTCGT 8 133 119 Antisense
ATCACTTTCTATCATGTCTGACCCA 9 29 147 Antisense
GTCTGACCCAGTTATTCTTGACGCG 609 471 162 Antisense
AACTGCGAGCAGAAGCCATGGGTAT 469 137 223 Antisense
GGGTATTCATGATCTACGGATGGCA 264 497 242 Antisense
AAGAAGACTCAATCCAAGTTCACTG 513 151 289 Antisense
AACGGATGGTTCCTGACAGCTGTTG 684 143 316 Antisense
Sequence Source Affymetrix Proprietary Database