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[176458_at]

Description Y47D7A.12 /REP_DB=WormBase Gene ID /WP=CE22061 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 50      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 203
1 2 3 4 range
A 112.8
(0.1)
A 		146.1
(1.6)
P 		178.1
(3)
P 		42.2
(-3)
A 		136
B 97.2
(-2.2)
A 		213.5
(3)
P 		182.4
(1.6)
P 		79.9
(-3)
A 		134
C 124.8
(-1.1)
A 		245.6
(3)
P 		152.2
(-0.1)
P 		66.7
(-3)
A 		179
avr 111.6
(-0.9) 		201.7
(3) 		170.9
(1.7) 		62.9
(-3) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 120.8
(3)
P 		75.2
(0.6)
A 		77.3
(0.7)
A 		11.9
(-2.8)
A 		8.7
(-3)
A 		15.6
(-2.6)
A 		112
B 144.3
(3)
P 		95.2
(0.6)
A 		106.2
(1.1)
A 		38
(-2.3)
A 		23.3
(-3)
A 		56.7
(-1.3)
A 		121
C 107.5
(2.8)
A 		109.9
(3)
M 		39.5
(-2.8)
A 		38.3
(-2.9)
A 		36.6
(-3)
A 		51.1
(-1.8)
A 		73
avr 124.2
(3) 		93.4
(1.2) 		74.3
(0) 		29.4
(-2.6) 		22.9
(-3) 		41.1
(-1.9) 		101
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 41.1
(2.2)
A 		31.7
(0.8)
P 		46.6
(3)
P 		6.2
(-3)
A 		40
B 31
(-0.6)
A 		52.7
(3)
P 		42.3
(1.3)
P 		17
(-3)
A 		36
C 41.3
(0)
A 		70.6
(3)
P 		53.1
(1.2)
P 		11.2
(-3)
A 		59
avr 37.8
(0.9) 		51.7
(3) 		47.3
(2.3) 		11.5
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 22.3
(1.9)
P 		26.8
(3)
A 		16.8
(0.5)
A 		3
(-2.9)
A 		2.6
(-3)
A 		3.8
(-2.7)
A 		24
B 50.2
(3)
P 		31.7
(0.3)
A 		25.8
(-0.6)
A 		10.1
(-2.9)
A 		9.5
(-3)
A 		21.1
(-1.3)
A 		41
C 39.8
(3)
A 		33.5
(1.8)
M 		10.1
(-2.6)
A 		7.7
(-3)
A 		11.8
(-2.2)
A 		17.1
(-1.2)
A 		32
avr 37.4
(3) 		30.7
(1.7) 		17.6
(-0.9) 		6.9
(-3) 		8
(-2.8) 		14
(-1.6) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176458_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14807
Sequence Type Exemplar sequence
Representative Public ID Y47D7A.12 NCBI
Target Description Y47D7A.12 /REP_DB=WormBase Gene ID /WP=CE22061 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071824(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071824 NCBI Caenorhabditis elegans Y47D7A.12 (Y47D7A.12) mRNA, complete cds. 11/11 None
SNAP00000043268 ENSEMBL cdna:SNAP chromosome:CEL140:V:4428814:4429462:-1 11/11 None
GENEFINDER00000043276 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4428814:4429462:-1 11/11 None
Y47D7A.12 ENSEMBL cdna:known chromosome:CEL140:V:4428814:4429462:-1 gene:Y47D7A.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4428813-4429462(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47D7A.12
Entrez Gene 189988 Entrez gene
SwissProt Q9N3U3 EMBL-EBI
WormBase CE22061 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60631 Hypothetical protein Y47D7A.12 [Caenorhabditis elegans] ref|NP_504225.1| Y47D7A.12 [Caenorhabditis elegans] 4.0E-42
blast CAE56033 Hypothetical protein CBG23597 [Caenorhabditis briggsae] 6.0E-18
Sequence
Target Sequence 
>C. ELEGANS:176458_AT
ccactaccctactcctaattggtgttcaatgcggttacccagttgctcagaacagttacc
caacaccaccaccgccatcggattcctatgtagtcccgaagcagtcctatccaactgctc
ctggagcatatgctacgaagcacagcttccctcagaactcggcacctgtaacagcacctc
cactaccaccaccaccggcgcccagtggctactcgtcagatgatgcttcagttacttcaa
atgttgcagcatcaccacctgcaccaccaactgatgctcaaatcgtgggctcatcatctt
catctacaaattacggtggatcttccccaacctacggaggatctttgtcgtctggaggaa
tcgtcggtggaaactccttgaactacggaacttataattctgcttccgctggaacccccg
cagccaccggagctggagcatcttcaggataccgccgacgtgccaaagccaaggctcgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACTACCCTACTCCTAATTGGTGT 414 273 32 Antisense
CAATGCGGTTACCCAGTTGCTCAGA 27 183 58 Antisense
CACCGCCATCGGATTCCTATGTAGT 230 201 101 Antisense
GAAGCAGTCCTATCCAACTGCTCCT 188 341 129 Antisense
CTCAGAACTCGGCACCTGTAACAGC 623 223 182 Antisense
CAGTGGCTACTCGTCAGATGATGCT 626 207 234 Antisense
TCAAATCGTGGGCTCATCATCTTCA 446 629 309 Antisense
GAGGATCTTTGTCGTCTGGAGGAAT 196 403 368 Antisense
AACTTATAATTCTGCTTCCGCTGGA 394 139 420 Antisense
GCTGGAGCATCTTCAGGATACCGCC 318 295 463 Antisense
CGACGTGCCAAAGCCAAGGCTCGCG 622 251 487 Antisense
Sequence Source Affymetrix Proprietary Database