[Home] | [Total List]

[176457_at]

Description Y39G10AR.I /REP_DB=WormBase Gene ID /WP=CE21769 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 78      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 92      6grp_total > 69      4grp_total > 58      6grp_highest_sub > Cu      6grp_cgc > 39      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 228
1 2 3 4 range
A 222.2
(-1.3)
P 		244.1
(0.7)
P 		269.7
(3)
P 		203
(-3)
P 		67
B 210.6
(-0.4)
P 		299.3
(2)
P 		335.3
(3)
P 		115.9
(-3)
P 		219
C 278.7
(0.2)
P 		287
(0.6)
P 		343.7
(3)
P 		204.4
(-3)
P 		139
avr 237.2
(-0.3) 		276.8
(1.3) 		316.2
(3) 		174.4
(-3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 439
1 2 3 4 5 6 range
A 330.2
(-0.8)
P 		215
(-2.5)
P 		183.9
(-3)
P 		187.1
(-3)
P 		354.7
(-0.5)
P 		589.6
(3)
P 		406
B 370.5
(-0.9)
P 		236
(-3)
P 		274.6
(-2.4)
P 		266.9
(-2.5)
P 		344.2
(-1.3)
P 		622.5
(3)
P 		387
C 270.7
(-2.1)
P 		230.6
(-2.7)
P 		206.7
(-3)
P 		212.7
(-2.9)
P 		361.9
(-0.7)
P 		617.7
(3)
P 		411
avr 323.8
(-1.4) 		227.2
(-2.9) 		221.7
(-3) 		222.2
(-3) 		353.6
(-1) 		609.9
(3) 		388
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 80.9
(3)
P 		53
(-0.3)
P 		70.5
(1.8)
P 		29.7
(-3)
P 		51
B 67.2
(1.8)
P 		73.9
(2.6)
P 		77.7
(3)
P 		24.7
(-3)
P 		53
C 92.3
(1.1)
P 		82.5
(0.4)
P 		119.8
(3)
P 		34.5
(-3)
P 		85
avr 80.1
(2.1) 		69.8
(1) 		89.3
(3) 		29.6
(-3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 192
1 2 3 4 5 6 range
A 60.9
(-1.8)
P 		76.5
(-0.9)
P 		40.1
(-3)
P 		47.4
(-2.6)
P 		107
(0.9)
P 		143.5
(3)
P 		103
B 128.9
(-0.7)
P 		78.6
(-2.6)
P 		66.7
(-3)
P 		70.7
(-2.9)
P 		139.8
(-0.3)
P 		232.1
(3)
P 		165
C 100.3
(-0.9)
P 		70.4
(-2)
P 		52.6
(-2.6)
P 		42.8
(-3)
P 		117.1
(-0.3)
P 		206.8
(3)
P 		164
avr 96.7
(-1.1) 		75.2
(-2.1) 		53.1
(-3) 		53.6
(-3) 		121.3
(-0.1) 		194.1
(3) 		141
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176457_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18672
Sequence Type Exemplar sequence
Representative Public ID Y39G10AR.I NCBI
Target Description Y39G10AR.I /REP_DB=WormBase Gene ID /WP=CE21769 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058555(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058555 NCBI Caenorhabditis elegans InCenP homolog family member (icp-1) (icp-1) mRNA, complete cds. 10/11 A 
GENEFINDER00000028486 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2302799:2306787:-1 10/11 None
SNAP00000028451 ENSEMBL cdna:SNAP chromosome:CEL140:I:2304717:2314729:-1 10/11 None
Y39G10AR.13.2 ENSEMBL cdna:known chromosome:CEL140:I:2304546:2306793:-1 gene:Y39G10AR.13 10/11 None
Y39G10AR.13.1 ENSEMBL cdna:known chromosome:CEL140:I:2304546:2306791:-1 gene:Y39G10AR.13 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2304274-2307336(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol icp-1
Ensembl Y39G10AR.13
Entrez Gene 171788 Entrez gene
SwissProt Q9GSQ0 EMBL-EBI
WormBase CE26991 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1587814_AT similar to Inner centromere protein cfa
CANINE_2:CFA.5954.1.A1_AT similar to Inner centromere protein cfa
CANINE_2:CFAAFFX.24355.1.S1_AT similar to Inner centromere protein cfa
CANINE_2:CFAAFFX.24355.1.S1_S_AT similar to Inner centromere protein cfa
CANINE_2:CFAAFFX.24365.1.S1_AT similar to Inner centromere protein cfa
CANINE_2:CFAAFFX.24370.1.S1_S_AT similar to Inner centromere protein cfa
CHICKEN:GGA.1251.2.S1_A_AT inner centromere protein antigens 135/155kDa gga
HG-U133A_2:219769_AT inner centromere protein antigens 135/155kDa hs
HG-U133_PLUS_2:219769_AT inner centromere protein antigens 135/155kDa hs
HG-U133A:219769_AT inner centromere protein antigens 135/155kDa hs
HG-FOCUS:219769_AT inner centromere protein antigens 135/155kDa hs
U133_X3P:G9910375_3P_AT inner centromere protein antigens 135/155kDa hs
HG-U95E:88327_AT inner centromere protein antigens 135/155kDa hs
U133_X3P:HS2.384653.1.S1_3P_AT Inner centromere protein antigens 135/155kDa hs
HG-U133_PLUS_2:1566044_AT Inner centromere protein antigens 135/155kDa hs
HG-U133_PLUS_2:1566043_AT Inner centromere protein antigens 135/155kDa hs
HG-U133_PLUS_2:244862_AT Inner centromere protein antigens 135/155kDa hs
HG-U133B:244862_AT Inner centromere protein antigens 135/155kDa hs
HG-U95B:43768_AT Inner centromere protein antigens 135/155kDa hs
HU35KSUBC:RC_AA132545_AT Inner centromere protein antigens 135/155kDa hs
MOUSE430_2:1439436_X_AT inner centromere protein mm
MOUSE430A_2:1439436_X_AT inner centromere protein mm
MOE430A:1439436_X_AT inner centromere protein mm
MOUSE430_2:1441314_AT inner centromere protein mm
MOE430B:1441314_AT inner centromere protein mm
MU11KSUBA:AA139030_S_AT inner centromere protein mm
MU11KSUBA:AA014535_S_AT inner centromere protein mm
MG-U74AV2:93758_AT inner centromere protein mm
MG-U74AV2:104468_AT inner centromere protein mm
MG-U74BV2:164272_AT inner centromere protein mm
MG-U74CV2:167338_I_AT inner centromere protein mm
MG-U74CV2:166306_AT inner centromere protein mm
MG-U74CV2:170509_AT inner centromere protein mm
MOE430A:1423092_AT inner centromere protein mm
MOUSE430A_2:1423092_AT inner centromere protein mm
MOUSE430_2:1423092_AT inner centromere protein mm
MOE430A:1423093_AT inner centromere protein mm
MOUSE430A_2:1423093_AT inner centromere protein mm
MOUSE430_2:1423093_AT inner centromere protein mm
MG-U74BV2:113149_AT Inner centromere protein (Incenp), mRNA mm
MU19KSUBC:TC40529_AT Inner centromere protein (Incenp), mRNA mm
RG-U34B:RC_AA943603_AT inner centromere protein antigens 135/155kDa (predicted) rn
RAE230B:1397539_AT inner centromere protein antigens 135/155kDa (predicted) rn
RAT230_2:1397539_AT inner centromere protein antigens 135/155kDa (predicted) rn
RAE230B:1378669_AT inner centromere protein antigens 135/155kDa (predicted) rn
RAT230_2:1378669_AT inner centromere protein antigens 135/155kDa (predicted) rn
RAE230B:1383292_AT inner centromere protein antigens 135/155kDa (predicted) rn
RAT230_2:1383292_AT inner centromere protein antigens 135/155kDa (predicted) rn
RG-U34B:RC_AI059996_AT Inner centromere protein antigens 135/155kDa (predicted) rn
RG-U34C:RC_AI072139_AT Inner centromere protein antigens 135/155kDa (predicted) rn
Protein Similarities
Method ID Description E-Value
blast NP_490956 InCenP homolog family member (icp-1) [Caenorhabditis elegans] gb|AAG24400.1| incenp-like protein ICP-1 [Caenorhabditis elegans] gb|AAK39616.1| Incenp homolog protein 1 [Caenorhabditis elegans] 0.0
blast ABA18185 TPX2-related alternative variant b [Caenorhabditis elegans] ref|NP_740806.1| Y39G10AR.12b [Caenorhabditis elegans] gb|AAL32238.1| Hypothetical protein Y39G10AR.12b [Caenorhabditis elegans] 0.0
blast ABA18184 TPX2-related alternative variant a [Caenorhabditis elegans] ref|NP_740805.1| Y39G10AR.12a [Caenorhabditis elegans] gb|AAK39617.1| Hypothetical protein Y39G10AR.12a [Caenorhabditis elegans] 0.0
blast CAE60296 Hypothetical protein CBG03880 [Caenorhabditis briggsae] 1.0E-115
Protein Domains
Database ID Description E-Value
scop a.2.7.Methicillin resistance protein FemA probable tRNA-binding arm All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Methicillin resistance protein FemA probable tRNA-binding arm 2.79999995231628
Pfam IPR005635 EMBL-EBI Inner centromere protein, ARK binding region 9.3E-35
Pfam IPR005635 EMBL-EBI Inner centromere protein, ARK binding region 9.3E-35
Sequence
Target Sequence 
>C. ELEGANS:176457_AT
gaaggagcgtcaactcagagctcgagaagagcaggagcattttctggccgttcagagaga
agagcaagctcagctggagaagcaaagagagcgagaagaggcagagctccaggcaacact
cgcaagatgcgcggagaaacaagctcgtcaggaagctcttcgaaaaacgccaccacctgc
agcctacgaaatgactccgccacgtacctatcaaaacaactcaaagaatgactatggttt
gaacgatcttaacagtgatgacgagacagatcaagaagatgatccacgcaaagatgtccc
ggcttgggccgaattcgcagttgtccgtgagaatgtcagaagacatgccattaatccacc
attcgacgtggctcaattcttcggatcgattggaaagccaaatctaaaggaaatctttag
tgatgctgtcaaagtcaagaagcgcggatcgtcagcacagctttgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGAGCGTCAACTCAGAGCTCGA 353 333 1482 Antisense
AGAGCAGGAGCATTTTCTGGCCGTT 266 69 1509 Antisense
GCTCCAGGCAACACTCGCAAGATGC 200 299 1587 Antisense
ACAAGCTCGTCAGGAAGCTCTTCGA 603 111 1620 Antisense
CCTGCAGCCTACGAAATGACTCCGC 52 267 1657 Antisense
CCGCCACGTACCTATCAAAACAACT 315 261 1678 Antisense
AAGATGTCCCGGCTTGGGCCGAATT 649 91 1772 Antisense
CCGAATTCGCAGTTGTCCGTGAGAA 160 263 1790 Antisense
AAGACATGCCATTAATCCACCATTC 358 153 1821 Antisense
CGACGTGGCTCAATTCTTCGGATCG 573 251 1845 Antisense
GCGGATCGTCAGCACAGCTTTGCTG 263 293 1925 Antisense
Sequence Source Affymetrix Proprietary Database