[Home] | [Total List]

[176456_s_at]

Description F52C12.2A /REP_DB=WormBase Gene ID /WP=CE26368 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 92      6grp_total > 96      4grp_total > 04      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1010
1 2 3 4 range
A 381
(-0.8)
P 		164
(-3)
P 		206.8
(-2.6)
P 		760.9
(3)
P 		597
B 375.7
(-2.1)
P 		231.5
(-3)
P 		237.2
(-3)
P 		1173.5
(3)
P 		942
C 434.8
(-1.7)
P 		246.1
(-3)
P 		265.1
(-2.9)
P 		1146.1
(3)
P 		900
avr 397.2
(-1.6) 		213.9
(-3) 		236.4
(-2.8) 		1026.8
(3) 		813

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 310
1 2 3 4 5 6 range
A 158.6
(-3)
P 		350.7
(1.2)
P 		290.3
(-0.1)
P 		393.9
(2.1)
P 		433
(3)
P 		419.5
(2.7)
P 		274
B 227
(-3)
P 		268.1
(-2)
P 		254
(-2.3)
P 		278.9
(-1.7)
P 		374.7
(0.7)
P 		469
(3)
P 		242
C 293
(-1.4)
P 		237.4
(-3)
P 		399.9
(1.6)
P 		272.6
(-2)
P 		449.4
(3)
P 		450.6
(3)
P 		213
avr 226.2
(-3) 		285.4
(-1.4) 		314.7
(-0.6) 		315.1
(-0.6) 		419
(2.3) 		446.4
(3) 		220
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 215
1 2 3 4 range
A 138.7
(3)
P 		35.6
(-3)
P 		54.1
(-1.9)
P 		111.4
(1.4)
P 		103
B 119.8
(-1)
P 		57.2
(-2.9)
P 		55
(-3)
P 		250.1
(3)
P 		195
C 143.9
(0.6)
P 		70.7
(-3)
P 		92.4
(-1.9)
P 		193.3
(3)
P 		123
avr 134.1
(0.7) 		54.5
(-3) 		67.2
(-2.4) 		184.9
(3) 		130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 29.2
(-3)
P 		124.7
(2.6)
P 		63.2
(-1)
P 		99.9
(1.2)
P 		130.7
(3)
P 		102.1
(1.3)
P 		102
B 79
(-2.1)
P 		89.2
(-1.5)
P 		61.7
(-3)
P 		73.9
(-2.4)
P 		152.2
(1.8)
P 		174.9
(3)
P 		113
C 108.6
(0.4)
P 		72.4
(-1.9)
P 		101.8
(-0.1)
P 		54.8
(-3)
P 		145.4
(2.7)
P 		150.9
(3)
P 		96
avr 72.3
(-3) 		95.4
(-1) 		75.6
(-2.7) 		76.2
(-2.7) 		142.8
(3) 		142.6
(3) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176456_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11205
Sequence Type Exemplar sequence
Representative Public ID F52C12.2A NCBI
Target Description F52C12.2A /REP_DB=WormBase Gene ID /WP=CE26368 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171282
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000001429 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1956724:1959683:1 11/11 None
F52C12.2 ENSEMBL cdna:known chromosome:CEL140:IV:1953578:1959697:1 gene:F52C12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1953600-1959689(+) 100.0 100.0
Public Domain and Genome References
Ensembl F52C12.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast H88640 protein F52C12.2 [imported] - Caenorhabditis elegans 1.0E-131
blast AAK70655 Hypothetical protein F52C12.2 [Caenorhabditis elegans] ref|NP_741332.1| F52C12.2 [Caenorhabditis elegans] 1.0E-120
blast H88640 protein F52C12.2 [imported] - Caenorhabditis elegans 1.0E-119
blast CAE74694 Hypothetical protein CBG22508 [Caenorhabditis briggsae] 1.0E-107
blast CAE74694 Hypothetical protein CBG22508 [Caenorhabditis briggsae] 1.0E-100
blast AAH97750 Unknown (protein for MGC:115438) [Xenopus laevis] 2.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR007177 EMBL-EBI Protein of unknown function DUF367 1.1E-68
Pfam IPR007209 EMBL-EBI Possible metal-binding region in RNase L inhibitor, RLI 1.8E-14
Sequence
Target Sequence 
>C. ELEGANS:176456_S_AT
tcgattttgggctttcatcacagggaaaggtaaccccagaagaaaagggtgtggatttgt
atgtacttgaacgggcggtcattagtacccatgataaatgcgcggcacttattgaaggtc
ttatggaaggatacaaaaaagccgacgggaaacagtttgtcgccgtggagaagaagctca
acgaaatccgactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGATTTTGGGCTTTCATCACAGGG 423 601 1463 Antisense
GATTTTGGGCTTTCATCACAGGGAA 655 427 1465 Antisense
TCACAGGGAAAGGTAACCCCAGAAG 312 623 1480 Antisense
AGGGTGTGGATTTGTATGTACTTGA 87 59 1508 Antisense
GTATGTACTTGAACGGGCGGTCATT 277 455 1521 Antisense
GAACGGGCGGTCATTAGTACCCATG 145 329 1531 Antisense
GTACCCATGATAAATGCGCGGCACT 177 459 1547 Antisense
AATGCGCGGCACTTATTGAAGGTCT 306 165 1559 Antisense
GCGCGGCACTTATTGAAGGTCTTAT 82 285 1562 Antisense
GGCACTTATTGAAGGTCTTATGGAA 479 535 1566 Antisense
GAAGAAGCTCAACGAAATCCGACTT 504 339 1632 Antisense
Sequence Source Affymetrix Proprietary Database