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[176455_at]

Description F52C12.2A /REP_DB=WormBase Gene ID /WP=CE26368 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 87      4grp_high_8_8 > 05      6grp_total > 87      4grp_total > 03      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 662
1 2 3 4 range
A 237.8
(-1.8)
P 		188.2
(-2.5)
P 		152.3
(-3)
P 		591.5
(3)
P 		439
B 230.3
(-2)
P 		129.7
(-3)
A 		188.6
(-2.4)
P 		752
(3)
P 		622
C 221.4
(-2.2)
P 		131.4
(-3)
A 		187
(-2.5)
P 		792.1
(3)
P 		661
avr 229.8
(-2.1) 		149.8
(-3) 		176
(-2.7) 		711.9
(3) 		562

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 209
1 2 3 4 5 6 range
A 92.7
(-3)
M 		152.5
(-0.4)
P 		191.1
(1.3)
P 		175.9
(0.7)
P 		158.6
(-0.1)
P 		228.6
(3)
P 		136
B 173.3
(-2)
P 		160.9
(-2.6)
P 		160.2
(-2.6)
P 		152.9
(-3)
P 		250.5
(1.8)
P 		274.8
(3)
P 		122
C 159.7
(-3)
P 		182.9
(-2)
P 		160.6
(-3)
A 		211.4
(-0.8)
P 		225.2
(-0.2)
P 		302
(3)
P 		142
avr 141.9
(-3) 		165.4
(-1.9) 		170.6
(-1.6) 		180.1
(-1.2) 		211.4
(0.3) 		268.5
(3) 		127
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 86.6
(3)
P 		40.8
(-2.9)
P 		39.8
(-3)
P 		86.6
(3)
P 		47
B 73.4
(-1.1)
P 		32
(-3)
A 		43.7
(-2.5)
P 		160.3
(3)
P 		128
C 73.3
(-0.8)
P 		37.8
(-3)
A 		65.2
(-1.3)
P 		133.6
(3)
P 		96
avr 77.8
(-0.3) 		36.9
(-3) 		49.6
(-2.2) 		126.8
(3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 17.1
(-3)
M 		54.2
(2.8)
P 		41.6
(0.8)
P 		44.6
(1.3)
P 		47.9
(1.8)
P 		55.7
(3)
P 		39
B 60.3
(-1)
P 		53.6
(-1.6)
P 		38.9
(-3)
P 		40.5
(-2.8)
P 		101.8
(2.9)
P 		102.5
(3)
P 		64
C 59.2
(-1.2)
P 		55.8
(-1.5)
P 		40.9
(-3)
A 		42.5
(-2.8)
P 		72.9
(0.2)
P 		101.1
(3)
P 		60
avr 45.5
(-2.3) 		54.5
(-1.2) 		40.5
(-3) 		42.5
(-2.7) 		74.2
(1.4) 		86.4
(3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176455_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11205
Sequence Type Exemplar sequence
Representative Public ID F52C12.2A NCBI
Target Description F52C12.2A /REP_DB=WormBase Gene ID /WP=CE26368 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171282
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000001429 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1956724:1959683:1 11/11 None
F52C12.2 ENSEMBL cdna:known chromosome:CEL140:IV:1953578:1959697:1 gene:F52C12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1953600-1959689(+) 100.0 100.0
Public Domain and Genome References
Ensembl F52C12.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast H88640 protein F52C12.2 [imported] - Caenorhabditis elegans 1.0E-131
blast AAK70655 Hypothetical protein F52C12.2 [Caenorhabditis elegans] ref|NP_741332.1| F52C12.2 [Caenorhabditis elegans] 1.0E-120
blast H88640 protein F52C12.2 [imported] - Caenorhabditis elegans 1.0E-119
blast CAE74694 Hypothetical protein CBG22508 [Caenorhabditis briggsae] 1.0E-107
blast CAE74694 Hypothetical protein CBG22508 [Caenorhabditis briggsae] 1.0E-100
blast AAH97750 Unknown (protein for MGC:115438) [Xenopus laevis] 2.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR007177 EMBL-EBI Protein of unknown function DUF367 1.1E-68
Pfam IPR007209 EMBL-EBI Possible metal-binding region in RNase L inhibitor, RLI 1.8E-14
Sequence
Target Sequence 
>C. ELEGANS:176455_AT
tcaaaaggataccgtcacccaacactggacactcagctcaacaaggcacgcacaaaacag
gagattcgtgggctcaataaggctcgagaactcggaatccacgtgcccgccgtctatttc
attgataacgagaagaatcagctaattatggagtttgtgcccggttcgacggcaaaaaat
tggatttctcaactaaatccggcggattttgatgcaaaaactcgagaatttggccaaatt
tttggcgaaaaactgggaaaattgcatcgcggaggcctaattcacggggatttaacaacg
tcgaatattattctacgggacgatgatctacagaaaatgacgtttatcgattttgggctt
tcatcacagggaaaggtaaccccagaagaaaagggtgtggatttgtatgtacttgaacgg
gcggtcattagtacccatgataaatgcgcggcacttattgaaggtcttatggaaggatac
aaaaaagccgacgggaaacagtttgtcgccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAAAGGATACCGTCACCCAACAC 216 629 1117 Antisense
TGGACACTCAGCTCAACAAGGCACG 16 549 1142 Antisense
AAGGCACGCACAAAACAGGAGATTC 332 161 1159 Antisense
AGATTCGTGGGCTCAATAAGGCTCG 516 63 1178 Antisense
TCGAGAACTCGGAATCCACGTGCCC 236 603 1200 Antisense
TGTGCCCGGTTCGACGGCAAAAAAT 444 555 1272 Antisense
ATTTCTCAACTAAATCCGGCGGATT 123 17 1300 Antisense
GAAAATTGCATCGCGGAGGCCTAAT 570 353 1373 Antisense
TATTCTACGGGACGATGATCTACAG 570 655 1425 Antisense
AATGACGTTTATCGATTTTGGGCTT 610 135 1452 Antisense
GCCGACGGGAAACAGTTTGTCGCCG 209 263 1603 Antisense
Sequence Source Affymetrix Proprietary Database