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[176454_s_at]

Description F52C12.2B /REP_DB=WormBase Gene ID /WP=CE25895 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 07      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 184
1 2 3 4 range
A 198.3
(3)
A 		20.2
(-3)
A 		76.6
(-1.1)
A 		163.7
(1.8)
A 		178
B 94
(-1.7)
A 		85.1
(-3)
A 		107.4
(0.4)
A 		124.7
(3)
A 		40
C 120.2
(3)
A 		14.6
(-3)
A 		107.1
(2.3)
A 		91.7
(1.4)
A 		106
avr 137.5
(3) 		40
(-3) 		97
(0.5) 		126.7
(2.3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 16.7
(-2.9)
A 		101.4
(3)
A 		14.8
(-3)
A 		52.1
(-0.4)
A 		86
(1.9)
A 		35
(-1.6)
A 		87
B 15.9
(-3)
A 		27.8
(-2.2)
A 		71.6
(0.7)
A 		106.4
(3)
A 		91.9
(2)
A 		86.6
(1.7)
A 		91
C 108.8
(1.5)
A 		16.7
(-3)
A 		112.3
(1.7)
A 		99.3
(1.1)
A 		138.5
(3)
A 		119.9
(2.1)
A 		122
avr 47.1
(-3) 		48.6
(-2.8) 		66.2
(-1) 		85.9
(1) 		105.5
(3) 		80.5
(0.4) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 72.2
(3)
A 		4.4
(-3)
A 		20
(-1.6)
A 		24
(-1.3)
A 		68
B 30
(3)
A 		21
(-3)
A 		24.9
(-0.4)
A 		26.6
(0.7)
A 		9
C 39.8
(3)
A 		4.2
(-3)
A 		37.3
(2.6)
A 		15.5
(-1.1)
A 		36
avr 47.3
(3) 		9.9
(-3) 		27.4
(-0.2) 		22
(-1.1) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 3.1
(-3)
A 		36
(3)
A 		3.2
(-3)
A 		13.2
(-1.2)
A 		26
(1.2)
A 		8.5
(-2)
A 		33
B 5.5
(-3)
A 		9.2
(-2.3)
A 		17.4
(-0.8)
A 		28.2
(1.3)
A 		37.3
(3)
A 		32.3
(2.1)
A 		32
C 40.3
(2.3)
A 		5.1
(-3)
A 		28.6
(0.6)
A 		20
(-0.7)
A 		44.8
(3)
A 		40.1
(2.3)
A 		40
avr 16.3
(-3) 		16.8
(-2.8) 		16.4
(-3) 		20.5
(-1.7) 		36
(3) 		27
(0.3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176454_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11176
Sequence Type Exemplar sequence
Representative Public ID F52C12.2B NCBI
Target Description F52C12.2B /REP_DB=WormBase Gene ID /WP=CE25895 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171282
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F52C12.2 ENSEMBL cdna:known chromosome:CEL140:IV:1953578:1959697:1 gene:F52C12.2 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171282 6/11 Cross Hyb Matching Probes None
GENEFINDER00000001427 6/11 Cross Hyb Matching Probes None
GENEFINDER00000001429 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1953600-1956921(+) 100.0 100.0
Public Domain and Genome References
Ensembl F52C12.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK70655 Hypothetical protein F52C12.2 [Caenorhabditis elegans] ref|NP_741332.1| F52C12.2 [Caenorhabditis elegans] 1.0E-120
blast H88640 protein F52C12.2 [imported] - Caenorhabditis elegans 1.0E-119
blast CAE74694 Hypothetical protein CBG22508 [Caenorhabditis briggsae] 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR007177 EMBL-EBI Protein of unknown function DUF367 1.1E-68
Pfam IPR007209 EMBL-EBI Possible metal-binding region in RNase L inhibitor, RLI 1.8E-14
Sequence
Target Sequence 
>C. ELEGANS:176454_S_AT
gccggtctctacattttaggcttccaggaggccgcaagccgcctcatgaagcccttctcc
tggggagatcactttattgagctcaacaaagagcttttagatctctacgcggcttgtgat
acaccggaagacgtgattcgagcacaaaatgagtatttggagagaatcgataaggaacgg
gagcaacattcccgggatattgatctaccgccgagtggtagtgatgaagaatatgaggat
gaggaagaagtggaagaattgaagaaaaatctccccattcactgccgccgagcttcatca
atttctgcacattgtcatttttcgttggatttttttttgataatttttttccttaatttt
tcgtttttgttattgtttgttattcatgtttcttacttgatttccggtaaaaaattcaaa
atgacagcggcgacgacaagctccgactcggaaggcgaaatggattttgagacgacaatt
gagacgggattcgggtatcaaatcgatggattactgtatcagggagccgaggcgaaagtt
acaaagtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCGGTCTCTACATTTTAGGCTTCC 480 257 529 Antisense
TTTAGGCTTCCAGGAGGCCGCAAGC 302 671 543 Antisense
TGAAGCCCTTCTCCTGGGGAGATCA 538 573 575 Antisense
GGGAGATCACTTTATTGAGCTCAAC 324 495 591 Antisense
AGAGCTTTTAGATCTCTACGCGGCT 697 67 618 Antisense
AGATCTCTACGCGGCTTGTGATACA 196 67 627 Antisense
CATGTTTCTTACTTGATTTCCGGTA 532 209 913 Antisense
AAATGACAGCGGCGACGACAAGCTC 454 119 947 Antisense
CGACAAGCTCCGACTCGGAAGGCGA 639 251 962 Antisense
GACGACAATTGAGACGGGATTCGGG 622 377 999 Antisense
GAGCCGAGGCGAAAGTTACAAAGTG 511 385 1052 Antisense
Sequence Source Affymetrix Proprietary Database