[Home] | [Total List]

[176453_at]

Description Y39G10AR.S /REP_DB=WormBase Gene ID /WP=CE21757 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 07      4grp_high_8_8 > 24      6grp_highest_nonorm > 80      6grp_total > 08      4grp_total > 47      6grp_cgc > 0      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 496
1 2 3 4 range
A 415.6
(3)
P 		91.3
(-3)
A 		110
(-2.7)
P 		156.7
(-1.8)
M 		324
B 576.4
(3)
P 		147.6
(-2.2)
P 		94.8
(-2.8)
P 		80.2
(-3)
A 		496
C 474.9
(3)
P 		107.6
(-3)
P 		106.9
(-3)
P 		175.3
(-1.9)
P 		368
avr 489
(3) 		115.5
(-2.8) 		103.9
(-3) 		137.4
(-2.5) 		385

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 244.9
(3)
P 		171.7
(-0.7)
P 		165.3
(-1)
P 		177.6
(-0.4)
P 		149.2
(-1.9)
P 		126.6
(-3)
P 		118
B 246.5
(3)
P 		198.3
(-1.1)
P 		214
(0.2)
P 		201.6
(-0.9)
P 		176.8
(-3)
P 		205.6
(-0.5)
P 		70
C 240
(2)
P 		209.7
(0.2)
P 		159.3
(-3)
P 		255.2
(3)
P 		168.5
(-2.4)
P 		179.7
(-1.7)
P 		96
avr 243.8
(3) 		193.2
(-0.8) 		179.5
(-1.9) 		211.5
(0.5) 		164.8
(-3) 		170.6
(-2.6) 		79
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 151.3
(3)
P 		19.8
(-3)
A 		28.8
(-2.6)
P 		22.9
(-2.9)
M 		132
B 183.8
(3)
P 		36.4
(-2.3)
P 		22
(-2.8)
P 		17.1
(-3)
A 		167
C 157.2
(3)
P 		30.9
(-2.9)
P 		37.2
(-2.6)
P 		29.6
(-3)
P 		128
avr 164.1
(3) 		29
(-2.8) 		29.3
(-2.7) 		23.2
(-3) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 45.1
(-0.2)
P 		61.1
(3)
P 		36
(-2)
P 		45
(-0.2)
P 		45
(-0.2)
P 		30.8
(-3)
P 		30
B 85.8
(3)
P 		66
(-0.5)
P 		52
(-3)
P 		53.4
(-2.8)
P 		71.8
(0.5)
P 		76.7
(1.4)
P 		34
C 88.9
(3)
P 		64
(-0.1)
P 		40.6
(-3)
P 		51.3
(-1.7)
P 		54.5
(-1.3)
P 		60.2
(-0.6)
P 		48
avr 73.3
(3) 		63.7
(1.1) 		42.9
(-3) 		49.9
(-1.6) 		57.1
(-0.2) 		55.9
(-0.4) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176453_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18673
Sequence Type Exemplar sequence
Representative Public ID Y39G10AR.S NCBI
Target Description Y39G10AR.S /REP_DB=WormBase Gene ID /WP=CE21757 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026585(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026585 NCBI Caenorhabditis elegans Y39G10AR.6 (Y39G10AR.6) mRNA, complete cds. 11/11 None
SNAP00000028462 ENSEMBL cdna:SNAP chromosome:CEL140:I:2331919:2338617:1 11/11 None
GENEFINDER00000028482 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2333343:2350469:1 11/11 None
Y39G10AR.6b ENSEMBL cdna:known chromosome:CEL140:I:2333327:2338617:1 gene:Y39G10AR.6 11/11 None
Y39G10AR.6a ENSEMBL cdna:known chromosome:CEL140:I:2333343:2338646:1 gene:Y39G10AR.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2333342-2338617(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ugt-31
Ensembl Y39G10AR.6
Entrez Gene 189771 Entrez gene
SwissProt Q86S61 EMBL-EBI
WormBase CE33221 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_001021756 Y39G10AR.6 [Caenorhabditis elegans] gb|AAO21409.1| Hypothetical protein Y39G10AR.6 [Caenorhabditis elegans] 0.0
blast NP_490966 Y39G10AR.5 [Caenorhabditis elegans] gb|AAK39609.2| Hypothetical protein Y39G10AR.5 [Caenorhabditis elegans] 0.0
blast NP_503298 Y49C4A.8a [Caenorhabditis elegans] gb|AAK72318.1| Hypothetical protein Y49C4A.8a [Caenorhabditis elegans] 1.0E-143
blast AAB42343 Udp-glucuronosyltransferase protein 25 [Caenorhabditis elegans] ref|NP_491438.1| C10H11.3 [Caenorhabditis elegans] 1.0E-143
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 9.2E-15
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 4.7E-22
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 4.9E-5
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 9.2E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021756.1 1 491-513
Y39G10AR.6b 1 491-513
Y39G10AR.6a 1 470-492
SNAP00000028462 1 473-495
GENEFINDER00000028482 6 4-26,495-517,532-554,575-597,612-634,647-666
Sequence
Target Sequence 
>C. ELEGANS:176453_AT
aactcgattctatctgcaattcgcaattttccaaatgtaacattcatctggaaatacgag
tcggacgacttgagatgggctgaaaacgttgaaaatgtgcattttctgaaatggattccc
cagacggctcttctaaataatccacgtgtcagtgcatttctgacgcacggaggtcttgga
agtacaaatgaattggcttttattggaaaaccatcgattattgtcccgattttcggcgat
cagggacgtaatgctccgatgttggctcggcacggaggagctctggtgctccaaaaattt
gacttggaaaatgcggaagttttgatcgattttatcggaaaaattgtatttgataaaagc
tacgcaaaaaacgccaaaaccctcgcaaatctgctcaacgcaagtcctttctcaccgaaa
gagctcgttgtgaagaatacggaattcgttggtaatttcggaccacttacccaaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTCGATTCTATCTGCAATTCGCA 213 141 682 Antisense
GTCGGACGACTTGAGATGGGCTGAA 106 471 741 Antisense
TCCCCAGACGGCTCTTCTAAATAAT 322 589 798 Antisense
ATAATCCACGTGTCAGTGCATTTCT 625 25 818 Antisense
GCATTTCTGACGCACGGAGGTCTTG 290 307 835 Antisense
ATTGTCCCGATTTTCGGCGATCAGG 315 3 901 Antisense
GGCGATCAGGGACGTAATGCTCCGA 615 541 916 Antisense
TAATGCTCCGATGTTGGCTCGGCAC 698 635 930 Antisense
GCTCGGCACGGAGGAGCTCTGGTGC 662 299 946 Antisense
AAATCTGCTCAACGCAAGTCCTTTC 268 117 1068 Antisense
TAATTTCGGACCACTTACCCAAATG 114 547 1134 Antisense
Sequence Source Affymetrix Proprietary Database