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[176452_at]

Description Y37E11AR.E /REP_DB=WormBase Gene ID /WP=CE21550 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 94      4grp_total > 09      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 45.6
(-2.5)
A 		59.9
(-1.7)
A 		36.1
(-3)
A 		144.4
(3)
A 		108
B 24.3
(-3)
A 		52.8
(0.5)
A 		72.5
(3)
A 		57.6
(1.1)
A 		48
C 46.6
(-0.6)
A 		16.8
(-3)
A 		32.2
(-1.8)
A 		90.9
(3)
A 		74
avr 38.8
(-3) 		43.2
(-2.6) 		46.9
(-2.2) 		97.6
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 14.6
(-2.4)
A 		16.5
(-2.3)
A 		4.6
(-3)
A 		29.4
(-1.5)
A 		101
(3)
A 		86.4
(2.1)
A 		96
B 10.3
(-3)
A 		11.5
(-2.9)
A 		21.4
(-2.4)
A 		58.6
(-0.3)
A 		119.2
(3)
A 		90.2
(1.4)
A 		109
C 4.5
(-3)
A 		64.2
(1.1)
A 		10.4
(-2.6)
A 		18.1
(-2.1)
A 		91.6
(3)
A 		66.4
(1.3)
A 		87
avr 9.8
(-3) 		30.7
(-1.7) 		12.1
(-2.9) 		35.4
(-1.4) 		103.9
(3) 		81
(1.5) 		94
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 16.6
(0.7)
A 		13
(-1.2)
A 		9.4
(-3)
A 		21.1
(3)
A 		12
B 7.8
(-3)
A 		13
(0.5)
A 		16.8
(3)
A 		12.3
(0)
A 		9
C 15.4
(3)
A 		4.8
(-3)
A 		11.2
(0.6)
A 		15.3
(2.9)
A 		11
avr 13.3
(0.1) 		10.3
(-3) 		12.5
(-0.8) 		16.2
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 2.7
(-2.7)
A 		5.9
(-2)
A 		1
(-3)
A 		7.5
(-1.7)
A 		30.5
(3)
A 		21
(1.1)
A 		30
B 3.6
(-3)
A 		3.8
(-3)
A 		5.2
(-2.8)
A 		15.5
(-1.4)
A 		48.4
(3)
A 		33.6
(1)
A 		45
C 1.7
(-3)
A 		19.6
(0.8)
A 		2.7
(-2.8)
A 		3.6
(-2.6)
A 		29.6
(3)
A 		22.2
(1.4)
A 		28
avr 2.7
(-3) 		9.8
(-1.7) 		3
(-2.9) 		8.9
(-1.9) 		36.2
(3) 		25.6
(1.1) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176452_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19121
Sequence Type Exemplar sequence
Representative Public ID Y37E11AR.E NCBI
Target Description Y37E11AR.E /REP_DB=WormBase Gene ID /WP=CE21550 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068010(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068010 NCBI Caenorhabditis elegans Y37E11AR.1 (Y37E11AR.1) mRNA, complete cds. 11/11 None
SNAP00000021670 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3756662:3759813:1 11/11 None
GENEFINDER00000021673 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3756237:3759112:1 11/11 None
Y37E11AR.1 ENSEMBL cdna:known chromosome:CEL140:IV:3755775:3759095:1 gene:Y37E11AR.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3755780-3759101(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37E11AR.1
Entrez Gene 189623 Entrez gene
SwissProt Q965X4 EMBL-EBI
WormBase CE21550 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68431 Hypothetical protein Y37E11AR.1 [Caenorhabditis elegans] ref|NP_500411.1| Y37E11AR.1 [Caenorhabditis elegans] 0.0
blast CAE65680 Hypothetical protein CBG10747 [Caenorhabditis briggsae] 1.0E-132
blast CAE65680 Hypothetical protein CBG10747 [Caenorhabditis briggsae] 1.0E-115
blast CAB07337 Hypothetical protein C37A5.1 [Caenorhabditis elegans] ref|NP_493472.1| C37A5.1 [Caenorhabditis elegans] 2.0E-82
blast CAB07337 Hypothetical protein C37A5.1 [Caenorhabditis elegans] ref|NP_493472.1| C37A5.1 [Caenorhabditis elegans] 1.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR000615 EMBL-EBI Bestrophin 2.5E-20
Pfam IPR000615 EMBL-EBI Bestrophin 1.0E-126
Pfam IPR000615 EMBL-EBI Bestrophin 1.0E-126
Pfam IPR000615 EMBL-EBI Bestrophin 2.5E-20
Pfam IPR000615 EMBL-EBI Bestrophin 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500411.1 2 20-42,54-76
Y37E11AR.1 2 20-42,54-76
Sequence
Target Sequence 
>C. ELEGANS:176452_AT
ggcgttgctcaatccattaggcgaggacgatgatgattttgagagcaactttttgattga
taagaacatttttaccggtatgcggattgtggaccaatttgacgaagcaccgccgctctt
cgaggacacattctccgatccgggagcaatgccaatttactcagaagaaagtcagaagaa
ttatcagaatggagcactagtggggtcggtgtcgaatgtaacccttgcccaattcgacga
gaacattaccatggtcccagtggctccaagactctcaatcggggatatcaatgctcacga
ccgttcgtcaattcgtcgccgcttcaagtcgggctcttcgcagaattgctcaagagcaaa
cagtttccgggagcaccccaaagtactacgccaaccttcagatggagagagcaatgatgc
atatgagctggattatgagacagttattaaaagtgttgacgacctcgtagcttcatcgcc
cacaaaacctggaaagtttttcacaagcctcacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGTTGCTCAATCCATTAGGCGAG 583 541 1044 Antisense
TCTTCGAGGACACATTCTCCGATCC 520 617 1160 Antisense
GTCGGTGTCGAATGTAACCCTTGCC 115 471 1248 Antisense
GAACATTACCATGGTCCCAGTGGCT 204 349 1284 Antisense
TGGCTCCAAGACTCTCAATCGGGGA 400 545 1304 Antisense
AATGCTCACGACCGTTCGTCAATTC 57 167 1333 Antisense
GGGCTCTTCGCAGAATTGCTCAAGA 211 493 1374 Antisense
GAGCAAACAGTTTCCGGGAGCACCC 691 389 1397 Antisense
AGTACTACGCCAACCTTCAGATGGA 475 61 1425 Antisense
AGTGTTGACGACCTCGTAGCTTCAT 447 59 1495 Antisense
GGAAAGTTTTTCACAAGCCTCACGA 342 527 1534 Antisense
Sequence Source Affymetrix Proprietary Database