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[176449_at]

Description Y37E11AR.B /REP_DB=WormBase Gene ID /WP=CE21544 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 22      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 95.2
(0.5)
A 		123.2
(3)
A 		55.8
(-3)
A 		109.7
(1.8)
A 		67
B 89.4
(-3)
A 		152.7
(3)
A 		105.9
(-1.4)
A 		115.7
(-0.5)
A 		63
C 99.5
(-0.3)
A 		82.8
(-2)
A 		73
(-3)
A 		131.8
(3)
A 		59
avr 94.7
(-0.6) 		119.6
(3) 		78.2
(-3) 		119.1
(2.9) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 100.4
(3)
A 		64.1
(0.6)
A 		86.7
(2.1)
A 		9.9
(-3)
A 		33
(-1.5)
A 		33.2
(-1.5)
A 		91
B 72.4
(-0.8)
A 		125
(3)
A 		99.1
(1.1)
A 		89.8
(0.4)
A 		92.4
(0.6)
A 		42.5
(-3)
A 		83
C 93.4
(1.3)
A 		114.9
(3)
A 		100.2
(1.8)
A 		111.2
(2.7)
A 		78.9
(0.1)
A 		39.2
(-3)
A 		76
avr 88.7
(1.8) 		101.3
(3) 		95.3
(2.4) 		70.3
(0) 		68.1
(-0.2) 		38.3
(-3) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 34.7
(3)
A 		26.8
(0.6)
A 		14.6
(-3)
A 		16.1
(-2.6)
A 		20
B 28.5
(-1.2)
A 		37.7
(3)
A 		24.5
(-3)
A 		24.7
(-2.9)
A 		13
C 32.9
(3)
A 		23.8
(-2.1)
A 		25.4
(-1.2)
A 		22.2
(-3)
A 		11
avr 32
(3) 		29.4
(1.6) 		21.5
(-2.7) 		21
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 18.5
(1.7)
A 		22.8
(3)
A 		18.9
(1.8)
A 		2.5
(-3)
A 		10
(-0.8)
A 		8.1
(-1.3)
A 		20
B 25.2
(-0.8)
A 		41.6
(3)
A 		24.1
(-1.1)
A 		23.8
(-1.1)
A 		37.6
(2.1)
A 		15.8
(-3)
A 		26
C 34.6
(2.9)
A 		35
(3)
A 		25.5
(0.4)
A 		22.4
(-0.5)
A 		25.5
(0.4)
A 		13.1
(-3)
A 		22
avr 26.1
(1) 		33.1
(3) 		22.8
(0) 		16.2
(-1.9) 		24.4
(0.5) 		12.3
(-3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176449_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19239
Sequence Type Exemplar sequence
Representative Public ID Y37E11AR.B NCBI
Target Description Y37E11AR.B /REP_DB=WormBase Gene ID /WP=CE21544 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028268
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000021675 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3752607:3755761:-1 None
Y37E11AR.7 ENSEMBL cdna:known chromosome:CEL140:IV:3752607:3755414:-1 gene:Y37E11AR.7 None
NM_001028268 NCBI Caenorhabditis elegans Y37E11AR.7 (Y37E11AR.7) mRNA, complete cds. None
SNAP00000021669 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3753121:3755414:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068009 1/11 Cross Hyb Matching Probes A 
SNAP00000021668 1/11 Cross Hyb Matching Probes None
GENEFINDER00000021676 1/11 Cross Hyb Matching Probes None
Y37E11AR.5 1/11 Cross Hyb Matching Probes A 
NM_068008 9/11 Negative Strand Matching Probes A 
SNAP00000021667 9/11 Negative Strand Matching Probes None
GENEFINDER00000021677 9/11 Negative Strand Matching Probes None
Y37E11AR.2 9/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3745745-3755420(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37E11AR.7
Entrez Gene 3564985 Entrez gene
SwissProt Q86FM3 EMBL-EBI
WormBase CE33855 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP13762 Hypothetical protein Y37E11AR.7 [Caenorhabditis elegans] ref|NP_001023439.1| Y37E11AR.7 [Caenorhabditis elegans] 0.0
blast CAE65678 Hypothetical protein CBG10745 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:176449_AT
gaagtgctcgagaatccggaatacaaaaaatcggcggaacttctcgcgcggatccttgcc
actgagaggttctccccgcggcaaaagatcattgatacggtggagatggctggaaggttc
gggcaaatgcccagactaaattttaacgcaatttctgtatttcgacagttaaattttgca
aaatttcggaattttgaaattaatttccaaattgtaaattttagagattttttttggaag
attgatgtcagtggccaggaagacgatatcctcgccttgaagcgtcgtgatgctcttgtg
gatcttcttcaaatgctccatcacatccgacaagcctccctgccacttgcagctagctcc
agggcacgggcagcagtagggtcggaattcgcagagctcctcgtgctcggtcttatcagc
gtgatggaagttcagggggcagccggacgtagagaatttgcatggaaagcggacggtgtt
ggcgatcttctcgaggcccaggttgcggacagaagctgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTGCTCGAGAATCCGGAATACA 621 335 2680 Antisense
GGCCAGGAAGACGATATCCTCGCCT 17 545 2932 Antisense
ATATCCTCGCCTTGAAGCGTCGTGA 320 21 2945 Antisense
GAAGCGTCGTGATGCTCTTGTGGAT 10 345 2958 Antisense
ATCTTCTTCAAATGCTCCATCACAT 465 31 2981 Antisense
GCACGGGCAGCAGTAGGGTCGGAAT 583 315 3043 Antisense
TAGGGTCGGAATTCGCAGAGCTCCT 213 653 3056 Antisense
TGCTCGGTCTTATCAGCGTGATGGA 392 581 3083 Antisense
GAAGTTCAGGGGGCAGCCGGACGTA 28 317 3106 Antisense
GAAAGCGGACGGTGTTGGCGATCTT 427 351 3144 Antisense
GGCCCAGGTTGCGGACAGAAGCTGT 61 523 3174 Antisense
Sequence Source Affymetrix Proprietary Database