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[176448_at]

Description Y102A11A.H /REP_DB=WormBase Gene ID /WP=CE26480 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_high1_10_10 > 04      6grp_total > 23      4grp_total > 51      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 167.2
(-3)
P 		181.1
(1.9)
P 		172.3
(-1.2)
P 		184.1
(3)
A 		17
B 146.9
(1.1)
P 		159.6
(2.1)
P 		171.9
(3)
P 		91.6
(-3)
M 		80
C 139
(1.5)
P 		139.5
(1.5)
P 		107.4
(-3)
M 		150
(3)
A 		43
avr 151
(0) 		160.1
(3) 		150.5
(-0.2) 		141.9
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 191.1
(3)
P 		128.4
(-1.7)
P 		158.4
(0.5)
P 		117.4
(-2.6)
P 		175.3
(1.8)
P 		111.6
(-3)
P 		80
B 146.3
(3)
P 		130.1
(1.2)
P 		107.2
(-1.2)
P 		119.4
(0.1)
P 		90.9
(-3)
P 		98.9
(-2.1)
P 		55
C 114.1
(-1)
P 		167
(1.4)
P 		160.4
(1.1)
M 		202.3
(3)
A 		74.2
(-2.8)
P 		69.8
(-3)
M 		133
avr 150.5
(3) 		141.8
(2.1) 		142
(2.1) 		146.4
(2.6) 		113.5
(-0.9) 		93.4
(-3) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 60.9
(3)
P 		39.3
(-0.8)
P 		45.1
(0.2)
P 		26.9
(-3)
A 		34
B 46.8
(3)
P 		39.4
(1.4)
P 		39.8
(1.5)
P 		19.5
(-3)
M 		27
C 46
(3)
P 		40.1
(1.3)
P 		37.4
(0.5)
M 		25.3
(-3)
A 		21
avr 51.2
(3) 		39.6
(0.5) 		40.8
(0.7) 		23.9
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 35.2
(-1.1)
P 		45.7
(1.3)
P 		34.5
(-1.3)
P 		29.8
(-2.4)
P 		52.9
(3)
P 		27.2
(-3)
P 		26
B 50.9
(3)
P 		43.3
(1.2)
P 		26
(-3)
P 		31.6
(-1.7)
P 		36.9
(-0.4)
P 		36.9
(-0.4)
P 		25
C 42.3
(1.1)
P 		51
(3)
P 		40.8
(0.8)
M 		40.7
(0.8)
A 		24
(-2.9)
P 		23.4
(-3)
M 		28
avr 42.8
(1.7) 		46.7
(3) 		33.8
(-1.4) 		34
(-1.4) 		37.9
(-0) 		29.2
(-3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176448_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19591
Sequence Type Exemplar sequence
Representative Public ID Y102A11A.H NCBI
Target Description Y102A11A.H /REP_DB=WormBase Gene ID /WP=CE26480 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075977(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075977 NCBI Caenorhabditis elegans Y102A11A.1 (Y102A11A.1) mRNA, complete cds. 11/11 None
GENEFINDER00000043304 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2051901:2053983:1 11/11 None
SNAP00000043295 ENSEMBL cdna:SNAP chromosome:CEL140:X:2053445:2053990:1 9/11 None
Y102A11A.1 ENSEMBL cdna:known chromosome:CEL140:X:2051901:2053990:1 gene:Y102A11A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2051900-2053990(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y102A11A.1
Entrez Gene 190857 Entrez gene
SwissProt Q95XJ6 EMBL-EBI
WormBase CE26480 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39313 Hypothetical protein Y102A11A.1 [Caenorhabditis elegans] ref|NP_508378.1| Y102A11A.1 [Caenorhabditis elegans] 1.0E-129
blast AAK39313 Hypothetical protein Y102A11A.1 [Caenorhabditis elegans] ref|NP_508378.1| Y102A11A.1 [Caenorhabditis elegans] 1.0E-128
blast CAE58913 Hypothetical protein CBG02172 [Caenorhabditis briggsae] 7.0E-85
blast AAK39313 Hypothetical protein Y102A11A.1 [Caenorhabditis elegans] ref|NP_508378.1| Y102A11A.1 [Caenorhabditis elegans] 7.0E-29
blast CAE58913 Hypothetical protein CBG02172 [Caenorhabditis briggsae] 5.0E-16
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508378.1 4 20-42,46-68,75-97,127-149
Y102A11A.1 4 20-42,46-68,75-97,127-149
GENEFINDER00000043304 4 20-42,46-68,75-97,127-149
Sequence
Target Sequence 
>C. ELEGANS:176448_AT
tatattcttcttcgcaagtgtccttcttctcccggtttttcgaaccacgtggagaaacat
caaagtgacccgcaaatcatcctcggtatacatagacggagataacgcgcctgtccctcc
ggtgcaaccaattttcaatatcaactccggccctccggctgctcagccagctccacaaca
aattatgatacctcctcagttgttcaatcaacaaatgcctcaattacaaaacccacagca
acacaatcagatctcccaacaaactcagtcgcaaatgttgcaaccacaacgaccacaaca
actctatccagcatcttctgccataatgcagccttcgggtgtgatacacttaaatctcta
tacaattcagcttcccaacggacatcaaacttatacaacttcttccccaattattgatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATATTCTTCTTCGCAAGTGTCCTT 70 663 420 Antisense
GACCCGCAAATCATCCTCGGTATAC 476 381 486 Antisense
ATAGACGGAGATAACGCGCCTGTCC 258 23 511 Antisense
CAATTTTCAATATCAACTCCGGCCC 625 179 548 Antisense
GATACCTCCTCAGTTGTTCAATCAA 168 425 606 Antisense
AAACCCACAGCAACACAATCAGATC 206 127 648 Antisense
AATCAGATCTCCCAACAAACTCAGT 2 171 664 Antisense
AACAACTCTATCCAGCATCTTCTGC 249 135 716 Antisense
GCCATAATGCAGCCTTCGGGTGTGA 17 281 739 Antisense
ACAATTCAGCTTCCCAACGGACATC 661 113 781 Antisense
ACAACTTCTTCCCCAATTATTGATC 364 111 814 Antisense
Sequence Source Affymetrix Proprietary Database