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[176447_at]

Description Y37E11AR.F /REP_DB=WormBase Gene ID /WP=CE21551 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 52      4grp_total > 35      6grp_cgc > 92      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 73.9
(-3)
A 		114.8
(3)
A 		87.7
(-1)
P 		105.3
(1.6)
A 		41
B 80.2
(1.6)
A 		70.7
(-0.8)
A 		85.8
(3)
A 		62.1
(-3)
A 		24
C 49.8
(0.5)
M 		63.2
(3)
A 		30.6
(-3)
M 		58.2
(2.1)
A 		33
avr 68
(-3) 		82.9
(3) 		68
(-3) 		75.2
(-0.1) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 109.8
(3)
A 		39.2
(-3)
A 		87.6
(1.1)
P 		62.1
(-1.1)
A 		58.9
(-1.3)
A 		43.1
(-2.7)
A 		71
B 53.7
(-0.5)
P 		57
(-0.3)
A 		97
(3)
M 		89.9
(2.4)
A 		23.2
(-3)
A 		50.9
(-0.7)
M 		74
C 20.9
(-3)
A 		75
(2)
A 		86.3
(3)
A 		47.3
(-0.6)
A 		43.9
(-0.9)
A 		39
(-1.3)
A 		65
avr 61.5
(-0.6) 		57.1
(-1.1) 		90.3
(3) 		66.4
(0) 		42
(-3) 		44.3
(-2.7) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 26.9
(3)
A 		24.9
(2)
A 		22.9
(0.9)
P 		15.4
(-3)
A 		12
B 25.6
(3)
A 		17.5
(-0.9)
A 		19.9
(0.2)
A 		13.2
(-3)
A 		12
C 16.5
(1.8)
M 		18.2
(3)
A 		10.7
(-2.4)
M 		9.8
(-3)
A 		8
avr 23
(3) 		20.2
(1.4) 		17.8
(-0.1) 		12.8
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 20.2
(3)
A 		13.9
(-0.9)
A 		19.1
(2.3)
P 		15.8
(0.3)
A 		17.8
(1.5)
A 		10.5
(-3)
A 		10
B 18.7
(0.9)
P 		19
(1)
A 		23.6
(2.9)
M 		23.8
(3)
A 		9.4
(-3)
A 		19
(1)
M 		14
C 7.7
(-3)
A 		22.9
(3)
A 		22
(2.6)
A 		9.5
(-2.3)
A 		14.2
(-0.4)
A 		13.1
(-0.9)
A 		15
avr 15.5
(-1.7) 		18.6
(0.7) 		21.6
(3) 		16.4
(-1) 		13.8
(-3) 		14.2
(-2.7) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176447_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19328
Sequence Type Exemplar sequence
Representative Public ID Y37E11AR.F NCBI
Target Description Y37E11AR.F /REP_DB=WormBase Gene ID /WP=CE21551 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y37E11AR.F
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y37E11AR.F Y37E11AR.F /REP_DB=WormBase Gene ID /WP=CE21551 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068011 11/11 Negative Strand Matching Probes A 
SNAP00000021671 11/11 Negative Strand Matching Probes None
GENEFINDER00000021672 11/11 Negative Strand Matching Probes None
Y37E11AR.6 10/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3761595-3761964(+) 80.19 100.0
Sequence
Target Sequence 
>C. ELEGANS:176447_AT
ttcttattcccctgatacaacgtaacccgctcgccacgtgtaatctccggccatgtgtta
tcaataggcatcactttctcgtaaaactgctcccacagcttttccgccgagctgtccatc
tcgacgaccggcggaatggtcttcggggtgcttgtggaagtactcgttgtggtggtagta
gtggtcttcttgtgatggtggcggtgatgattgtgggacgcacaaagaccgcctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTATTCCCCTGATACAACGTAA 223 687 62 Antisense
AATCTCCGGCCATGTGTTATCAATA 56 171 103 Antisense
TATCAATAGGCATCACTTTCTCGTA 646 659 120 Antisense
ATCACTTTCTCGTAAAACTGCTCCC 591 27 131 Antisense
CCATCTCGACGACCGGCGGAATGGT 542 271 177 Antisense
CCGGCGGAATGGTCTTCGGGGTGCT 118 263 189 Antisense
GGGGTGCTTGTGGAAGTACTCGTTG 98 497 206 Antisense
GTTGTGGTGGTAGTAGTGGTCTTCT 142 437 227 Antisense
GTAGTGGTCTTCTTGTGATGGTGGC 366 455 239 Antisense
GATGGTGGCGGTGATGATTGTGGGA 571 407 255 Antisense
TTGTGGGACGCACAAAGACCGCCTT 314 239 272 Antisense
Sequence Source Affymetrix Proprietary Database