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[176444_at]

Description Y105E8B.KK /REP_DB=WormBase Gene ID /WP=CE24094 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster 6grp_high1_10_10 > 07      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_total > 04      4grp_total > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 214.9
(3)
P 		211.4
(2.8)
P 		114.3
(-3)
P 		128.4
(-2.2)
P 		101
B 216.5
(1)
P 		252.5
(3)
P 		223.3
(1.3)
P 		147
(-3)
P 		106
C 248.6
(3)
P 		172.8
(-3)
P 		183
(-2.2)
P 		200.3
(-0.8)
P 		76
avr 226.7
(3) 		212.2
(1.7) 		173.5
(-1.7) 		158.6
(-3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 139
(-1.5)
M 		246.9
(3)
P 		103.7
(-3)
P 		188.5
(0.6)
P 		171.9
(-0.1)
P 		185.1
(0.4)
P 		143
B 178
(3)
P 		109.8
(-3)
P 		113.1
(-2.7)
P 		151.4
(0.7)
P 		143.2
(-0.1)
P 		114.5
(-2.6)
P 		68
C 216.8
(2.5)
P 		156.5
(-1.9)
P 		224.1
(3)
P 		155.9
(-1.9)
P 		166.5
(-1.2)
P 		141.1
(-3)
P 		83
avr 177.9
(3) 		171.1
(1.7) 		147
(-3) 		165.3
(0.6) 		160.5
(-0.4) 		146.9
(-3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 78.3
(3)
P 		45.9
(-0.3)
P 		29.9
(-1.9)
P 		18.8
(-3)
P 		60
B 69
(3)
P 		62.4
(1.9)
P 		51.8
(0.3)
P 		31.3
(-3)
P 		38
C 82.3
(3)
P 		49.7
(-1)
P 		63.8
(0.7)
P 		33.8
(-3)
P 		49
avr 76.5
(3) 		52.7
(0.1) 		48.5
(-0.5) 		28
(-3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 25.6
(-2.7)
M 		87.8
(3)
P 		22.6
(-3)
P 		47.8
(-0.7)
P 		51.9
(-0.3)
P 		45.1
(-0.9)
P 		65
B 61.9
(3)
P 		36.6
(-1.4)
P 		27.5
(-3)
P 		40.1
(-0.8)
P 		58.2
(2.4)
P 		42.7
(-0.3)
P 		34
C 80.3
(3)
P 		47.8
(-1)
P 		57
(0.1)
P 		31.3
(-3)
P 		53.9
(-0.2)
P 		47.2
(-1.1)
P 		49
avr 55.9
(2.6) 		57.4
(3) 		35.7
(-3) 		39.7
(-1.9) 		54.7
(2.3) 		45
(-0.4) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176444_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18818
Sequence Type Exemplar sequence
Representative Public ID Y105E8B.KK NCBI
Target Description Y105E8B.KK /REP_DB=WormBase Gene ID /WP=CE24094 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026531(11), NM_001026532(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026531 NCBI Caenorhabditis elegans Y105E8B.2a (Y105E8B.2) mRNA, complete cds. 11/11 None
NM_001026532 NCBI Caenorhabditis elegans Y105E8B.2b (Y105E8B.2) mRNA, complete cds. 11/11 None
GENEFINDER00000011751 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14648111:14650679:-1 10/11 None
Y105E8B.2a ENSEMBL cdna:known chromosome:CEL140:I:14642580:14650679:-1 gene:Y105E8B.2 11/11 A 
Y105E8B.2b.2 ENSEMBL cdna:known chromosome:CEL140:I:14642605:14650771:-1 gene:Y105E8B.2 11/11 A 
Y105E8B.2b.1 ENSEMBL cdna:known chromosome:CEL140:I:14642605:14650686:-1 gene:Y105E8B.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011732 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14649113-14650610(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y105E8B.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC70108 Hypothetical protein Y105E8B.2a [Caenorhabditis elegans] ref|NP_001021702.1| Y105E8B.2a [Caenorhabditis elegans] 0.0
blast CAE72605 Hypothetical protein CBG19796 [Caenorhabditis briggsae] 0.0
blast CAD91705 Hypothetical protein Y105E8B.2b [Caenorhabditis elegans] ref|NP_001021703.1| Y105E8B.2b [Caenorhabditis elegans] 1.0E-173
blast CAC70108 Hypothetical protein Y105E8B.2a [Caenorhabditis elegans] ref|NP_001021702.1| Y105E8B.2a [Caenorhabditis elegans] 1.0E-148
Sequence
Target Sequence 
>C. ELEGANS:176444_AT
gattattccagacggacgccttttctccatcggattacatccgggaccgcctgaaagggg
tgaaaatcggtgatgagacacgaaaacttcgacatcttcgttcagaaatgggcgctctga
accatgcttcacaggagacactgaaaaataacgtttttcgaaattatcagcaatttattg
atgcttcgaaagagatttctcatttggagcgagaaatctaccaattaacacattccctaa
tcgagcaaaaacaagtaatcgagaatttaataatgatgactggagatgataaatcatcaa
ttcatacagtatcaagtcattctacaaccacctcgaccactaatccaattcaaattttaa
tgcagaaaatggagggaatcggcgggattttaaataatatgtcaacttcggaaaaagtaa
ttttgtacggggaaatggagcaattcgacgtggaaacaaagaagccagtgcagaagtgta
tgctgatattattgtctcatcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTATTCCAGACGGACGCCTTTTC 318 429 32 Antisense
CCTTTTCTCCATCGGATTACATCCG 316 269 50 Antisense
TTACATCCGGGACCGCCTGAAAGGG 86 671 66 Antisense
GACATCTTCGTTCAGAAATGGGCGC 565 369 122 Antisense
AAATGGGCGCTCTGAACCATGCTTC 298 119 137 Antisense
GAACCATGCTTCACAGGAGACACTG 532 345 150 Antisense
AAATCTACCAATTAACACATTCCCT 66 119 245 Antisense
TAACACATTCCCTAATCGAGCAAAA 125 639 257 Antisense
TATCAAGTCATTCTACAACCACCTC 443 659 341 Antisense
CCTCGACCACTAATCCAATTCAAAT 251 267 362 Antisense
GTATGCTGATATTATTGTCTCATCG 621 455 509 Antisense
Sequence Source Affymetrix Proprietary Database