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[176443_s_at]

Description Y38B5A.1 /REP_DB=WormBase Gene ID /WP=CE26070 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 69      4grp_total > 61      6grp_cgc > 19      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 34.8
(-2.1)
A 		29
(-3)
A 		31.4
(-2.6)
A 		69.7
(3)
A 		41
B 42.7
(2.8)
M 		43.8
(3)
P 		35.6
(1.3)
A 		15
(-3)
A 		29
C 49.1
(1.3)
A 		39
(0.2)
A 		64.2
(3)
P 		9.6
(-3)
A 		55
avr 42.2
(2.3) 		37.3
(-0.1) 		43.7
(3) 		31.4
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 39.4
(-1.5)
A 		50.3
(0.3)
A 		35.3
(-2.2)
A 		30.4
(-3)
A 		32.7
(-2.6)
A 		67
(3)
A 		37
B 36.1
(3)
A 		27.8
(1.1)
A 		10.1
(-3)
A 		18.8
(-1)
A 		19.7
(-0.8)
A 		24.8
(0.4)
A 		26
C 11.5
(-3)
A 		17.8
(-1.8)
A 		16.3
(-2.1)
A 		44.1
(3)
A 		36.5
(1.6)
A 		18.2
(-1.8)
A 		33
avr 29
(0.1) 		32
(1.2) 		20.6
(-3) 		31.1
(0.9) 		29.6
(0.4) 		36.7
(3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 12.7
(3)
A 		6.3
(-3)
A 		8.2
(-1.2)
A 		10.2
(0.7)
A 		6
B 13.6
(3)
M 		10.8
(1.4)
P 		8.2
(-0.1)
A 		3.2
(-3)
A 		10
C 16.2
(1.2)
A 		11.2
(-0.2)
A 		22.4
(3)
P 		1.6
(-3)
A 		21
avr 14.2
(3) 		9.4
(-0.1) 		12.9
(2.2) 		5
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 7.3
(-3)
A 		17.9
(3)
A 		7.7
(-2.8)
A 		7.7
(-2.8)
A 		9.9
(-1.5)
A 		16.3
(2.1)
A 		11
B 12.6
(3)
A 		9.3
(1.1)
A 		2.4
(-3)
A 		5
(-1.5)
A 		8
(0.3)
A 		9.3
(1.1)
A 		10
C 4.3
(-2.8)
A 		5.4
(-2)
A 		4.1
(-3)
A 		8.9
(0.7)
A 		11.8
(3)
A 		6.1
(-1.4)
A 		8
avr 8.1
(0.3) 		10.9
(3) 		4.7
(-3) 		7.2
(-0.6) 		9.9
(2) 		10.6
(2.7) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176443_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12507
Sequence Type Exemplar sequence
Representative Public ID Y38B5A.1 NCBI
Target Description Y38B5A.1 /REP_DB=WormBase Gene ID /WP=CE26070 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029031(10), NM_001029033(10), NM_001029032(10), NM_001029030(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029031 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-58) (tag-58) mRNA, complete cds. 10/11 None
NM_001029033 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-58) (tag-58) mRNA, complete cds. 10/11 None
NM_001029032 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-58) (tag-58) mRNA, complete cds. 10/11 None
NM_001029030 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-58) (tag-58) mRNA, complete cds. 10/11 None
W06H8.8e ENSEMBL cdna:known chromosome:CEL140:V:6123860:6205127:-1 gene:W06H8.8 10/11 A 
W06H8.8g ENSEMBL cdna:known chromosome:CEL140:V:6123881:6205127:-1 gene:W06H8.8 10/11 A 
W06H8.8f ENSEMBL cdna:known chromosome:CEL140:V:6124187:6205127:-1 gene:W06H8.8 10/11 A 
W06H8.8d ENSEMBL cdna:known chromosome:CEL140:V:6164158:6205127:-1 gene:W06H8.8 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
266969 7 4 NM_001029029 183162_at (11)
NM_001029030 176443_s_at (10), 183162_at (11), 185778_at (11)
NM_001029031 174345_at (11), 176443_s_at (10), 183162_at (11), 185778_at (11), 187965_s_at (11), 187994_at (10)
NM_001029032 176443_s_at (10), 183162_at (11), 185778_at (11), 187965_s_at (11), 187994_at (10)
NM_001029033 174345_at (11), 176443_s_at (10), 183162_at (11), 185778_at (11), 187965_s_at (11), 187994_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6166830-6174105(-) 100.0 100.0
Public Domain and Genome References
Ensembl W06H8.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001024202 Temporarily Assigned Gene name family member (tag-58) [Caenorhabditis elegans] gb|AAN61517.1| 2MDa_1 protein [Caenorhabditis elegans] 0.0
blast NP_001024204 Temporarily Assigned Gene name family member (tag-58) [Caenorhabditis elegans] 0.0
blast NP_001024203 Temporarily Assigned Gene name family member (tag-58) [Caenorhabditis elegans] gb|AAN61518.1| 2MDa_2 protein [Caenorhabditis elegans] 0.0
blast NP_001024201 Temporarily Assigned Gene name family member (tag-58) [Caenorhabditis elegans] gb|AAN61519.1| 1MDa_1 protein [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 1.0E-52
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 1.0E-53
hanks 2.1.17 CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; TWITCH 3.0E-85
Protein Domains
Database ID Description E-Value
scop a.2.7.Phenylalanyl-tRNA synthetase (PheRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Phenylalanyl-tRNA synthetase (PheRS) 4.30000019073486
scop a.2.7.Phenylalanyl-tRNA synthetase (PheRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Phenylalanyl-tRNA synthetase (PheRS) 4.19999980926514
Pfam IPR003961 EMBL-EBI Fibronectin, type III 9.3E-14
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.4E-17
Pfam IPR003961 EMBL-EBI Fibronectin, type III 4.3E-16
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.7E-11
Pfam IPR003961 EMBL-EBI Fibronectin, type III 7.4E-10
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.0E-14
Pfam IPR003961 EMBL-EBI Fibronectin, type III 7.9E-12
Pfam IPR003961 EMBL-EBI Fibronectin, type III 2.3E-6
Pfam IPR003961 EMBL-EBI Fibronectin, type III 2.4E-17
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.4E-12
Pfam IPR000719 EMBL-EBI Protein kinase 2.2E-83
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0015
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.017
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.5E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.093
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0041
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.7E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.077
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 5.3E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0026
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.2
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.89
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.48
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.15
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.1
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 9.2E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0025
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.7E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.3E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 8.3E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 5.2E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0022
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.15
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.5E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.022
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.4E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.5E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.6E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0017
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 8.4E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.1E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.71
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.8E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.4E-10
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0037
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.4E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.0E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.012
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0084
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.5E-5
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.4E-12
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.5E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.022
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.4E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.5E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.6E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0017
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 8.4E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.1E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.71
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.8E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.4E-10
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0037
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.4E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.0E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.012
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0084
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.5E-5
Pfam IPR003961 EMBL-EBI Fibronectin, type III 9.3E-14
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.4E-17
Sequence
Target Sequence 
>C. ELEGANS:176443_S_AT
tcgacgactcgatttccatcagaatgaagagattgaaacttgaggattctggcgagatca
agatcatagggaagaatgattcatccgaagatcaattgagaattccaataaatgttattg
aagtcacaagcaagccaacttcacttcaagtcacaagcacagaaagagaaaccgtaactc
tgacatggtcattgccaactgaactcaacggttccaatgtgaatgagtacttggtagaac
gaaagactgttgatggtggaagatggagacatgcttgtactgtcactgatagtcgtgctg
ttgtggatggtctattctcgggaacggaatatgttttccgagttgtcgctgtgaatggag
caggacaaagtgcgccgagtgataccattgaagcaacgacacaggcggaggaggagatcg
gtgagtattctttgataattttcgcgcgaatttttcaaaaaatttcggatatttattccg
caaataaataccacgtacaaaatttctacaaaactcatttcttttcaaagttgtcgaatg
tttcaaagtcaatttcattcttcgtttcgaaggatattctccaggttagcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGACGACTCGATTTCCATCAGAAT 202 603 5642 Antisense
GCAAGCCAACTTCACTTCAAGTCAC 266 319 5771 Antisense
GAAACCGTAACTCTGACATGGTCAT 167 357 5809 Antisense
GGTCATTGCCAACTGAACTCAACGG 452 503 5828 Antisense
ACATGCTTGTACTGTCACTGATAGT 691 105 5910 Antisense
GATAGTCGTGCTGTTGTGGATGGTC 605 423 5929 Antisense
TGTGGATGGTCTATTCTCGGGAACG 13 555 5943 Antisense
ATGTTTTCCGAGTTGTCGCTGTGAA 509 47 5972 Antisense
AAGTGCGCCGAGTGATACCATTGAA 340 159 6009 Antisense
GAAGCAACGACACAGGCGGAGGAGG 44 341 6031 Antisense
GAAGGATATTCTCCAGGTTAGCATA 667 333 6210 Antisense
Sequence Source Affymetrix Proprietary Database