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[176442_at]

Description Y71F9AR.B /REP_DB=WormBase Gene ID /WP=CE22854 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 24      4grp_total > 36      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 113.2
(1.9)
A 		123
(3)
A 		69.4
(-3)
A 		101.4
(0.6)
A 		54
B 117.2
(1.9)
A 		105.7
(0.3)
A 		82.3
(-3)
A 		124.7
(3)
A 		42
C 90.5
(-3)
A 		124.2
(3)
A 		101.3
(-1.1)
A 		94.2
(-2.3)
A 		34
avr 107
(1.1) 		117.6
(3) 		84.3
(-3) 		106.8
(1.1) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 137.6
(1.1)
A 		140.9
(1.4)
A 		117.6
(-0.6)
A 		88.9
(-3)
A 		126.7
(0.2)
A 		159.7
(3)
A 		71
B 72.6
(-0.1)
A 		96.6
(2.3)
A 		43.4
(-3)
A 		103.5
(3)
A 		81.1
(0.8)
A 		78.6
(0.5)
A 		60
C 132.8
(2.7)
A 		65.8
(-1.5)
A 		137.1
(3)
A 		115.9
(1.7)
A 		42.8
(-3)
A 		44.1
(-2.9)
A 		94
avr 114.3
(3) 		101.1
(0.4) 		99.4
(0.1) 		102.8
(0.8) 		83.5
(-3) 		94.1
(-0.9) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 41.2
(3)
A 		26.7
(-0.3)
A 		18.1
(-2.3)
A 		14.8
(-3)
A 		26
B 37.4
(3)
A 		26.1
(-0.7)
A 		19.1
(-3)
A 		26.6
(-0.5)
A 		18
C 30
(1.3)
A 		35.7
(3)
A 		35.3
(2.9)
A 		15.9
(-3)
A 		20
avr 36.2
(3) 		29.5
(0.6) 		24.2
(-1.2) 		19.1
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 25.4
(-2.4)
A 		50.1
(3)
A 		25.6
(-2.3)
A 		22.5
(-3)
A 		38.2
(0.4)
A 		38.9
(0.6)
A 		28
B 25.3
(1)
A 		32.2
(2.8)
A 		10.6
(-3)
A 		27.4
(1.5)
A 		32.9
(3)
A 		29.3
(2)
A 		22
C 49.2
(3)
A 		20.1
(-1.9)
A 		34.9
(0.6)
A 		23.3
(-1.4)
A 		13.9
(-3)
A 		14.8
(-2.8)
A 		35
avr 33.3
(2.5) 		34.1
(3) 		23.7
(-3) 		24.4
(-2.6) 		28.3
(-0.3) 		27.7
(-0.7) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176442_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18750
Sequence Type Exemplar sequence
Representative Public ID Y71F9AR.B NCBI
Target Description Y71F9AR.B /REP_DB=WormBase Gene ID /WP=CE22854 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058681(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058681 NCBI Caenorhabditis elegans Y71F9AR.2 (Y71F9AR.2) mRNA, complete cds. 11/11 None
GENEFINDER00000022204 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2981736:2985168:-1 11/11 None
Y71F9AR.2 ENSEMBL cdna:known chromosome:CEL140:I:2981736:2985168:-1 gene:Y71F9AR.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022199 3/11 Cross Hyb Matching Probes None
SNAP00000022200 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2981735-2985168(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71F9AR.2
Entrez Gene 190589 Entrez gene
SwissProt Q95XT2 EMBL-EBI
WormBase CE22854 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.26199.1.S1_AT similar to RAS-like, family 12 protein cfa
CHICKEN:GGAAFFX.4584.1.S1_AT similar to RAS-like, family 12 protein; Ras family member Ris gga
HG-U133_PLUS_2:219167_AT RAS-like, family 12 hs
HG-U133A:219167_AT RAS-like, family 12 hs
HG-FOCUS:219167_AT RAS-like, family 12 hs
HG-U133A_2:219167_AT RAS-like, family 12 hs
HU35KSUBA:RC_AA621440_AT RAS-like, family 12 hs
U133_X3P:G7706094_3P_AT RAS-like, family 12 hs
HG-U95B:44119_AT RAS-like, family 12 hs
MG-U74BV2:163439_AT RAS-like, family 12 mm
MOE430A:1428067_AT RAS-like, family 12 mm
MOUSE430A_2:1428067_AT RAS-like, family 12 mm
MOUSE430_2:1428067_AT RAS-like, family 12 mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7264 small GTPase mediated signal transduction inferred from electronic annotation QuickGO AmiGO
15031 protein transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68585 Hypothetical protein Y71F9AR.2 [Caenorhabditis elegans] ref|NP_491082.1| Y71F9AR.2 [Caenorhabditis elegans] 1.0E-180
blast CAE60556 Hypothetical protein CBG04185 [Caenorhabditis briggsae] 1.0E-158
blast AAH54128 Hypothetical protein MGC63633 [Danio rerio] ref|NP_956689.1| hypothetical protein LOC393366 [Danio rerio] 3.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 8.8E-7
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 2.1E-14
Sequence
Target Sequence 
>C. ELEGANS:176442_AT
gaatgctcggctgcaatcgatttacgacaattcacacagggtcttcactcgatttttcag
aacataatctccggagcacgcagcccatcgccacgacaatgctcatcagattctgaaatt
attactccacgaaaaggagccttcgccgctctccgatcctcctctcgatcttcacaagtt
cgcgcgaaaacttctacaacaaaaactccggctccactgcacaaaactccgtcgttgagc
aaattgaagacgggaagcaagctacttaagctcaatatgaaaagcttcacgccgaaaagg
aggaccatcagtagtctggatgcactgctcaaagcaacggcgactggaaatgagcaggtg
aacagcatcgataaggcgttgaacacgccgaccgacagaattatgaaggcgaatatcgaa
ttcgaaaaggtcgtcacaatcaaagcaacggattccagcgaagttgaaaaatacaccgtg
ctcaagggatctgtcgaggatgagctggtggctgctcgtaacctgaaacgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGCTCGGCTGCAATCGATTTAC 218 331 463 Antisense
GACAATTCACACAGGGTCTTCACTC 123 365 488 Antisense
GGGTCTTCACTCGATTTTTCAGAAC 346 497 501 Antisense
GAACATAATCTCCGGAGCACGCAGC 146 351 522 Antisense
ATCGCCACGACAATGCTCATCAGAT 534 37 549 Antisense
CCACGAAAAGGAGCCTTCGCCGCTC 153 1 589 Antisense
CTCTCGATCTTCACAAGTTCGCGCG 641 229 624 Antisense
ACTGCACAAAACTCCGTCGTTGAGC 260 85 678 Antisense
GTAGTCTGGATGCACTGCTCAAAGC 710 451 773 Antisense
GAACACGCCGACCGACAGAATTATG 273 351 843 Antisense
GTGGCTGCTCGTAACCTGAAACGCC 655 491 970 Antisense
Sequence Source Affymetrix Proprietary Database