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[176438_at]

Description Y71G12B.P /REP_DB=WormBase Gene ID /WP=CE22920 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 40      4grp_total > 48      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 2.6
(-3)
A 		44.5
(3)
A 		24.7
(0.2)
A 		5.8
(-2.5)
A 		42
B 4.2
(-3)
A 		17.8
(-0.6)
A 		37.6
(3)
A 		10.7
(-1.8)
A 		33
C 3
(-3)
A 		22.7
(-1.1)
A 		66.3
(3)
A 		12.7
(-2.1)
A 		63
avr 3.3
(-3) 		28.3
(0.8) 		42.9
(3) 		9.7
(-2) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 12.7
(0.7)
A 		16.5
(3)
A 		14.6
(1.8)
A 		12.6
(0.6)
A 		7.6
(-2.4)
A 		6.7
(-3)
A 		10
B 12
(-1.4)
A 		15.1
(-0.6)
A 		30.3
(3)
A 		5.2
(-3)
A 		8.6
(-2.2)
A 		5.1
(-3)
A 		25
C 9.9
(-2)
A 		17.5
(-0.5)
A 		10.1
(-2)
A 		34.2
(3)
A 		5.7
(-2.9)
A 		5.3
(-3)
A 		29
avr 11.5
(-0.2) 		16.4
(2.1) 		18.3
(3) 		17.3
(2.5) 		7.3
(-2.2) 		5.7
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 1
(-2.9)
A 		9.7
(3)
A 		6.5
(0.8)
A 		0.8
(-3)
A 		9
B 1.3
(-3)
A 		4.4
(-0.5)
A 		8.7
(3)
A 		2.3
(-2.2)
A 		7
C 1
(-3)
A 		6.5
(-1.5)
A 		23.1
(3)
A 		2.1
(-2.7)
A 		22
avr 1.1
(-3) 		6.9
(-0) 		12.8
(3) 		1.7
(-2.7) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 2.3
(-2)
A 		5.9
(3)
A 		3.2
(-0.8)
A 		3.2
(-0.8)
A 		2.3
(-2)
A 		1.6
(-3)
A 		4
B 4.2
(-0.2)
A 		5
(0.7)
A 		7.3
(3)
A 		1.4
(-3)
A 		3.5
(-0.9)
A 		1.9
(-2.5)
A 		6
C 3.7
(-0.8)
A 		5.3
(1.1)
A 		2.6
(-2.1)
A 		6.9
(3)
A 		1.8
(-3)
A 		1.8
(-3)
A 		5
avr 3.4
(-0.3) 		5.4
(3) 		4.4
(1.3) 		3.8
(0.3) 		2.5
(-1.8) 		1.8
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176438_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18711
Sequence Type Exemplar sequence
Representative Public ID Y71G12B.P NCBI
Target Description Y71G12B.P /REP_DB=WormBase Gene ID /WP=CE22920 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058473
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000001770 ENSEMBL cdna:SNAP chromosome:CEL140:I:1640723:1643971:1 None
GENEFINDER00000001833 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1640723:1643971:1 None
Y73E7A.8 ENSEMBL cdna:known chromosome:CEL140:I:1634741:1644085:1 gene:Y73E7A.8 None
NM_058473 NCBI Caenorhabditis elegans Y73E7A.8 (Y73E7A.8) mRNA, complete cds. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1640722-1645872(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73E7A.8
Entrez Gene 171726 Entrez gene
SwissProt Q95XL6 EMBL-EBI
WormBase CE27538 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK66029 Hypothetical protein Y73E7A.8 [Caenorhabditis elegans] ref|NP_490874.1| Y73E7A.8 [Caenorhabditis elegans] 0.0
blast CAE74430 Hypothetical protein CBG22163 [Caenorhabditis briggsae] 0.0
blast AAK66029 Hypothetical protein Y73E7A.8 [Caenorhabditis elegans] ref|NP_490874.1| Y73E7A.8 [Caenorhabditis elegans] 6.0E-96
blast CAE74430 Hypothetical protein CBG22163 [Caenorhabditis briggsae] 6.0E-70
Sequence
Target Sequence 
>C. ELEGANS:176438_AT
aaaagcgcgtcaagacccaacgcacgaaaaccatcaaacttcattacggggacgtgttgc
ccgccgacgaagtgaatcgaaaattcccgaaattccgaaatcgaaatgctcatcgagcaa
gaatattcggaatcaaaacctcgtcgattccagaggaaacgctgaaaattcagacgaaaa
agtccgaattgacggatgaaattaacgatttgagggatttaatggaacaaatggatgaga
gaattgaatcaagatctgctttaatggaagataattttgatagagctgttaagccgaaac
ataacaaaaagtatatacatttacaaaaaatgcggaagattcaagtgaaattgagatcgt
ctaagacacacaaaaagaaagtcggcgaaaaaagccttgtaggcagcatcctccaactgc
gcatccaacaccaccaattccccattccgagtcaccacgtgccgttgcccactctcaaca
ctccgcccatccttctgccacaccccattcttggctccaaccaaacggagcccgtcgccc
aagtagacatccttaacggtaagcttctcgacagcggagcactctgcgagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAGCGCGTCAAGACCCAACGCAC 546 131 422 Antisense
GACCCAACGCACGAAAACCATCAAA 584 379 435 Antisense
ACCATCAAACTTCATTACGGGGACG 642 1 451 Antisense
TCATTACGGGGACGTGTTGCCCGCC 654 611 462 Antisense
GTTGCCCGCCGACGAAGTGAATCGA 336 439 477 Antisense
AAAAGCCTTGTAGGCAGCATCCTCC 632 131 811 Antisense
CCATTCTTGGCTCCAACCAAACGGA 461 269 926 Antisense
CGTCGCCCAAGTAGACATCCTTAAC 207 243 954 Antisense
GACATCCTTAACGGTAAGCTTCTCG 362 367 967 Antisense
GGTAAGCTTCTCGACAGCGGAGCAC 606 503 979 Antisense
CTCGACAGCGGAGCACTCTGCGAGC 82 233 988 Antisense
Sequence Source Affymetrix Proprietary Database