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[176436_at]

Description Y71G12A.D /REP_DB=WormBase Gene ID /WP=CE25578 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 64      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 41.7
(1.1)
A 		9
(-3)
A 		39.8
(0.9)
A 		56.8
(3)
A 		48
B 38.5
(0.3)
A 		10.7
(-3)
A 		43.5
(0.9)
A 		60.9
(3)
A 		50
C 49.6
(1.3)
A 		17.8
(-3)
A 		62.3
(3)
A 		30.1
(-1.3)
A 		45
avr 43.3
(2) 		12.5
(-3) 		48.5
(2.9) 		49.3
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 53.5
(-0.1)
A 		36.7
(-2.4)
A 		75.7
(3)
M 		61.6
(1.1)
A 		32.3
(-3)
A 		68.5
(2)
A 		43
B 20.8
(-3)
A 		35
(0.3)
A 		26
(-1.8)
A 		42.8
(2.1)
A 		33
(-0.2)
A 		46.8
(3)
A 		26
C 41.3
(-1.7)
A 		37.4
(-2.5)
A 		64.7
(3)
A 		58.2
(1.7)
A 		34.7
(-3)
A 		50.3
(0.1)
A 		30
avr 38.5
(-1.6) 		36.4
(-2.2) 		55.5
(3) 		54.2
(2.6) 		33.3
(-3) 		55.2
(2.9) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 15.2
(3)
A 		1.9
(-3)
A 		10.4
(0.8)
A 		8.3
(-0.1)
A 		13
B 12.3
(2.6)
A 		2.6
(-3)
A 		10.1
(1.3)
A 		13
(3)
A 		10
C 16.4
(1.1)
A 		5.1
(-3)
A 		21.7
(3)
A 		5.1
(-3)
A 		17
avr 14.6
(3) 		3.2
(-3) 		14.1
(2.7) 		8.8
(-0.1) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 9.9
(-2.8)
A 		13.1
(-0.1)
A 		16.5
(2.8)
M 		15.6
(2.1)
A 		9.7
(-3)
A 		16.7
(3)
A 		7
B 7.2
(-2.5)
A 		11.6
(-0.2)
A 		6.3
(-3)
A 		11.3
(-0.3)
A 		13.4
(0.8)
A 		17.5
(3)
A 		11
C 15.3
(1.4)
A 		11.4
(-2.8)
A 		16.5
(2.7)
A 		11.7
(-2.5)
A 		11.2
(-3)
A 		16.8
(3)
A 		6
avr 10.8
(-3) 		12
(-1.8) 		13.1
(-0.8) 		12.9
(-1) 		11.4
(-2.4) 		17
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176436_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18734
Sequence Type Exemplar sequence
Representative Public ID Y71G12A.D NCBI
Target Description Y71G12A.D /REP_DB=WormBase Gene ID /WP=CE25578 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058514(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058514 NCBI Caenorhabditis elegans Y71G12A.2 (Y71G12A.2) mRNA, complete cds. 10/11 None
SNAP00000037833 ENSEMBL cdna:SNAP chromosome:CEL140:I:1895393:1910469:1 10/11 None
Y71G12A.2 ENSEMBL cdna:known chromosome:CEL140:I:1895162:1904607:1 gene:Y71G12A.2 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000037835 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1895235-1899427(+) 91.27 91.27
Public Domain and Genome References
Gene Title
Ensembl Y71G12A.2
Entrez Gene 3564796 Entrez gene
SwissProt Q9BL51 EMBL-EBI
WormBase CE36759 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31568 Hypothetical protein Y71G12A.2 [Caenorhabditis elegans] ref|NP_490915.3| Y71G12A.2 [Caenorhabditis elegans] 0.0
blast CAE74398 Hypothetical protein CBG22130 [Caenorhabditis briggsae] 0.0
blast CAF94112 unnamed protein product [Tetraodon nigroviridis] 7.0E-17
Sequence
Target Sequence 
>C. ELEGANS:176436_AT
aacagcacacttgggagccgtttgcttatttttcatcgatgaaattaatttgtttcaaag
aaattatagaattttttcactcaaaaattaaagaaaagacagaatacgctcgcctctatt
ggagttttggagcaattgaatacgcaatgtcaatattcgatgatctcgaaaagttgctcc
acgagtttgtgctccgttccggagagcctgaatctccgaaatggctcgcccaactgctca
acacaaaaatcgacgatcgtcccacgttgatttccggcggcttctcagtgcaacgaatct
cgaaatcagaagctcattatcttggaatgaggaattatttgttgtgtcaacaaatcatta
tgtccattcatttgtatcaacaaaaaatgaaatcaaatgatgcggcgccaagtttgagat
cag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACAGCACACTTGGGAGCCGTTTGC 216 137 677 Antisense
TTGGGAGCCGTTTGCTTATTTTTCA 67 707 687 Antisense
AAAAGACAGAATACGCTCGCCTCTA 216 133 770 Antisense
CGATGATCTCGAAAAGTTGCTCCAC 538 249 834 Antisense
AAAGTTGCTCCACGAGTTTGTGCTC 278 123 846 Antisense
TTGTGCTCCGTTCCGGAGAGCCTGA 433 707 863 Antisense
GCCTGAATCTCCGAAATGGCTCGCC 196 283 882 Antisense
AATCGACGATCGTCCCACGTTGATT 280 169 924 Antisense
CGGCTTCTCAGTGCAACGAATCTCG 224 243 954 Antisense
ATCATTATGTCCATTCATTTGTATC 231 31 1030 Antisense
GATGCGGCGCCAAGTTTGAGATCAG 351 413 1075 Antisense
Sequence Source Affymetrix Proprietary Database