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[176435_s_at]

Description Y105E8B.BB /REP_DB=WormBase Gene ID /WP=CE24103 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster 6grp_total > 66      4grp_total > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 96.9
(-1.8)
A 		121.6
(3)
A 		94.7
(-2.2)
A 		90.5
(-3)
A 		31
B 86.6
(0.2)
M 		52.2
(-3)
A 		67.5
(-1.6)
A 		117.3
(3)
A 		65
C 66.5
(-2.4)
A 		53.5
(-3)
A 		63.1
(-2.5)
A 		176.4
(3)
A 		123
avr 83.3
(-2.1) 		75.8
(-2.9) 		75.1
(-3) 		128.1
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 10.5
(-2.7)
A 		65.5
(1.5)
A 		66.6
(1.5)
A 		65.9
(1.5)
A 		5.9
(-3)
A 		86
(3)
A 		80
B 41.3
(-0.1)
A 		43.3
(0.1)
A 		28.9
(-1.1)
A 		4.9
(-3)
A 		8.7
(-2.7)
A 		79.4
(3)
A 		75
C 18.2
(-1.6)
A 		29.7
(-0.3)
A 		5.4
(-3)
A 		59.7
(3)
A 		23.2
(-1)
A 		57.3
(2.7)
A 		54
avr 23.3
(-2) 		46.2
(0.3) 		33.6
(-1) 		43.5
(0) 		12.6
(-3) 		74.2
(3) 		62
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 35.3
(3)
A 		26.4
(0.6)
A 		24.8
(0.1)
A 		13.2
(-3)
A 		22
B 27.6
(3)
M 		12.9
(-3)
A 		15.6
(-1.9)
A 		25
(1.9)
A 		15
C 22
(-0.2)
A 		15.4
(-3)
A 		22
(-0.2)
A 		29.7
(3)
A 		14
avr 28.3
(3) 		18.2
(-3) 		20.8
(-1.5) 		22.6
(-0.4) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 1.9
(-3)
A 		23.3
(3)
A 		14.5
(0.5)
A 		16.7
(1.2)
A 		1.8
(-3)
A 		20.9
(2.3)
A 		22
B 14.4
(-0.2)
A 		14.4
(-0.2)
A 		7
(-1.8)
A 		1.3
(-3)
A 		3.5
(-2.5)
A 		29.6
(3)
A 		28
C 6.8
(-1.2)
A 		9.1
(-0.4)
A 		1.4
(-3)
A 		12
(0.6)
A 		7.5
(-0.9)
A 		19.2
(3)
A 		18
avr 7.7
(-1.9) 		15.6
(0.6) 		7.6
(-2) 		10
(-1.2) 		4.3
(-3) 		23.2
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176435_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18824
Sequence Type Exemplar sequence
Representative Public ID Y105E8B.BB NCBI
Target Description Y105E8B.BB /REP_DB=WormBase Gene ID /WP=CE24103 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026512, NM_001026513
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000013493 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14575493:14588979:-1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026512 7/11 Cross Hyb Matching Probes None
NM_001026513 5/11 Cross Hyb Matching Probes None
SNAP00000013358 4/11 Cross Hyb Matching Probes None
Y105E8A.24a 7/11 Cross Hyb Matching Probes A 
Y105E8A.24b 5/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14575423-14588910(-) 99.06 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD92404 Hypothetical protein Y105E8A.24b [Caenorhabditis elegans] ref|NP_001021684.1| Y105E8A.24b [Caenorhabditis elegans] 0.0
blast CAD21673 Hypothetical protein Y105E8A.24a [Caenorhabditis elegans] ref|NP_001021683.1| Y105E8A.24a [Caenorhabditis elegans] 0.0
blast CAE72600 Hypothetical protein CBG19790 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000013493 1 1169-1191
Sequence
Target Sequence 
>C. ELEGANS:176435_S_AT
ggtggtggtgcaatgatgacgtcaacagctacagcagtcgacgattcaatggaaatgtta
cggaaaaaagagaaagaaattcgtgaacttcaacaaaaagtgcttgccgatcgagatgaa
cttgccgagaaacaaaaagcgatagatgcccaagaagaagagattcagacgaaatgggcg
gctctgcaagcgcgctccattgaacaacaacagtctccaatgcatgtgagaaaaaatttg
cgaaataaaaaaatcaagaaacttcacattttatttatgttttccgaaaaaattgaaact
ttaatttttaaatttaacaaaaatttcggaaaaaaatactttgaggctgatactacaaac
tacaagattttctcagcctcaaccattgtggagaggctgaaaaatcttgtagtttgtagt
cttttttccacgattctcattcaatgtttctctgtaatttcaaataaaacactgcaactt
tttcctcacgagggacgaggaaaaaccacaaatccaacttcccccgtcctcatctgcatc
atcttcatcgtcgtcgcaaaacaacactacagattggtcaccaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGGTGGTGCAATGATGACGTCAA 21 501 3094 Antisense
AACAGCTACAGCAGTCGACGATTCA 45 137 3117 Antisense
GCTTGCCGATCGAGATGAACTTGCC 343 305 3195 Antisense
ACGAAATGGGCGGCTCTGCAAGCGC 199 93 3262 Antisense
ACAACAACAGTCTCCAATGCATGTG 491 111 3297 Antisense
ACTACAAGATTTTCTCAGCCTCAAC 475 101 3452 Antisense
TCTCAGCCTCAACCATTGTGGAGAG 57 613 3464 Antisense
CTTTTTTCCACGATTCTCATTCAAT 299 223 3514 Antisense
TTCTCATTCAATGTTTCTCTGTAAT 129 693 3527 Antisense
CATCGTCGTCGCAAAACAACACTAC 156 213 3639 Antisense
ACAACACTACAGATTGGTCACCAAT 681 111 3654 Antisense
Sequence Source Affymetrix Proprietary Database