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[176432_at]

Description Y105E8B.LL /REP_DB=WormBase Gene ID /WP=CE24095 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 20      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 51      6grp_total > 23      4grp_total > 12      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1204
1 2 3 4 range
A 780.8
(-0.6)
P 		580.3
(-1.9)
P 		392.8
(-3)
P 		1379.2
(3)
P 		986
B 769.7
(-1.3)
P 		487.4
(-3)
P 		482.7
(-3)
P 		1506.2
(3)
P 		1024
C 796
(-1.2)
P 		590
(-2.3)
P 		463.7
(-3)
P 		1596.7
(3)
P 		1133
avr 782.2
(-1.1) 		552.6
(-2.4) 		446.4
(-3) 		1494
(3) 		1048

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 499
1 2 3 4 5 6 range
A 717.9
(3)
P 		714.1
(2.9)
P 		719.5
(3)
P 		579.4
(0.5)
P 		383.7
(-3)
P 		535.9
(-0.3)
P 		336
B 802.8
(3)
P 		665.6
(1)
P 		715.9
(1.8)
P 		630.2
(0.5)
P 		383.1
(-3)
P 		459.9
(-1.9)
P 		420
C 576.5
(0.6)
P 		637.8
(1.4)
P 		629.7
(1.3)
P 		760.9
(3)
P 		304.1
(-3)
P 		464.7
(-0.9)
P 		457
avr 699.1
(3) 		672.5
(2.5) 		688.4
(2.8) 		656.8
(2.3) 		357
(-3) 		486.8
(-0.7) 		342
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 218
1 2 3 4 range
A 284.3
(3)
P 		126
(-2.2)
P 		102.7
(-3)
P 		201.9
(0.3)
P 		182
B 245.5
(0.8)
P 		120.4
(-2.8)
P 		111.9
(-3)
P 		321
(3)
P 		209
C 263.5
(2.7)
P 		169.6
(-2.6)
P 		161.6
(-3)
P 		269.2
(3)
P 		108
avr 264.4
(3) 		138.7
(-2.4) 		125.4
(-3) 		264
(3) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 181
1 2 3 4 5 6 range
A 132.3
(-2.3)
P 		254
(3)
P 		156.7
(-1.2)
P 		146.9
(-1.6)
P 		115.8
(-3)
P 		130.5
(-2.4)
P 		138
B 279.3
(3)
P 		221.6
(0.2)
P 		173.8
(-2.1)
P 		166.9
(-2.5)
P 		155.6
(-3)
P 		171.5
(-2.2)
P 		124
C 213.7
(3)
P 		194.6
(2)
P 		160.3
(0.2)
P 		153
(-0.2)
P 		98.4
(-3)
P 		155.6
(-0)
P 		115
avr 208.4
(2.1) 		223.4
(3) 		163.6
(-0.6) 		155.6
(-1.1) 		123.3
(-3) 		152.5
(-1.2) 		100
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176432_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18826
Sequence Type Exemplar sequence
Representative Public ID Y105E8B.LL NCBI
Target Description Y105E8B.LL /REP_DB=WormBase Gene ID /WP=CE24095 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061141(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061141 NCBI Caenorhabditis elegans Y105E8B.7 (Y105E8B.7) mRNA, complete cds. 11/11 None
GENEFINDER00000011750 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14652183:14659139:1 11/11 None
Y105E8B.7 ENSEMBL cdna:known chromosome:CEL140:I:14652183:14654671:1 gene:Y105E8B.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011733 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14652113-14654602(+) 98.88 100.0
Public Domain and Genome References
Gene Title
Ensembl Y105E8B.7
Entrez Gene 190914 Entrez gene
SwissProt Q9NF15 EMBL-EBI
WormBase CE24095 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60850 Hypothetical protein Y105E8B.4 [Caenorhabditis elegans] ref|NP_493543.1| Y105E8B.4 [Caenorhabditis elegans] 0.0
blast CAE72607 Hypothetical protein CBG19798 [Caenorhabditis briggsae] 1.0E-149
blast CAB60849 Hypothetical protein Y105E8B.7 [Caenorhabditis elegans] ref|NP_493542.1| Y105E8B.7 [Caenorhabditis elegans] 1.0E-126
blast CAB60849 Hypothetical protein Y105E8B.7 [Caenorhabditis elegans] ref|NP_493542.1| Y105E8B.7 [Caenorhabditis elegans] 1.0E-121
blast CAE72606 Hypothetical protein CBG19797 [Caenorhabditis briggsae] 1.0E-53
blast NP_006521 glioma-amplified sequence-41 [Homo sapiens] gb|AAH00994.1| Glioma-amplified sequence-41 [Homo sapiens] dbj|BAA91678.1| unnamed protein product [Homo sapiens] gb|AAD12188.1| GAS41 protein [Homo sapiens] sp|O95619|YETS4_HUMAN YEATS domain-containing protein 4 (Glioma-amplified sequence-41) (Gas41) (NuMA binding protein 1) (NuBI-1) (NuBI1) 1.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR005033 EMBL-EBI YEATS family 7.9E-20
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.4E-14
Sequence
Target Sequence 
>C. ELEGANS:176432_AT
ctccttcacaacgctagtcacaatttttttgaatcttccaaacgaaaagccacgtacaat
cccatacgaattaaccctattcaccggagatcaagatgttcaattagaaactcaaaagct
agttgttcaaaaggatgtacccccggcgtacctggaacttatcaagaaatacgctagaac
taaaaaacgaaaggcttcacttatatcgaatgatgaaaaatcgccttcgaggaaaatgca
caaaattactccggtgaaggaagaggaatcatctcagaaaatgagtaaatcgaaggaaaa
gggagtgccaattccgaaaattgatatagaaatcgagaaagcctcacctaaaaaggagaa
aaaggagaaggtcaagtcaccggaagagttaacgagaagattgaatgagtgcacggattc
tcatgttatttataaagccagcgaatatctactcactctgccggacaccaaattgtcaca
aactacactaaaactctcatttgatctctccagatgtgatagcacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCTTCACAACGCTAGTCACAATT 481 235 237 Antisense
CGAAAAGCCACGTACAATCCCATAC 406 251 279 Antisense
CAATCCCATACGAATTAACCCTATT 623 181 293 Antisense
TTAACCCTATTCACCGGAGATCAAG 646 683 307 Antisense
CCCGGCGTACCTGGAACTTATCAAG 235 259 378 Antisense
GTGCACGGATTCTCATGTTATTTAT 376 481 645 Antisense
AAGCCAGCGAATATCTACTCACTCT 243 149 671 Antisense
TCACTCTGCCGGACACCAAATTGTC 527 627 689 Antisense
GTCACAAACTACACTAAAACTCTCA 222 461 711 Antisense
AAAACTCTCATTTGATCTCTCCAGA 367 131 726 Antisense
GATCTCTCCAGATGTGATAGCACAA 521 419 739 Antisense
Sequence Source Affymetrix Proprietary Database