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[176431_at]

Description Y71G12B.A /REP_DB=WormBase Gene ID /WP=CE22912 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 84      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 20.3
(-1.7)
A 		8.6
(-3)
A 		36.5
(0.1)
A 		62.9
(3)
A 		54
B 16.3
(3)
A 		3.6
(-2.8)
A 		3.2
(-3)
A 		6.9
(-1.3)
A 		13
C 1.5
(-3)
A 		4.4
(-2.3)
A 		16.4
(0.4)
A 		28.1
(3)
A 		27
avr 12.7
(-1.4) 		5.5
(-3) 		18.7
(-0.1) 		32.6
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 36.8
(3)
A 		4.3
(-3)
A 		23.5
(0.5)
A 		17.6
(-0.5)
A 		22.9
(0.4)
A 		11.9
(-1.6)
A 		33
B 7
(-2.3)
A 		3.1
(-3)
A 		36.4
(3)
A 		26.2
(1.2)
A 		20.3
(0.1)
A 		22.5
(0.5)
A 		33
C 10
(-0.3)
A 		2
(-3)
A 		4.3
(-2.2)
A 		2.1
(-3)
A 		19.6
(3)
A 		14.6
(1.3)
A 		18
avr 17.9
(1.9) 		3.1
(-3) 		21.4
(3) 		15.3
(1) 		20.9
(2.8) 		16.3
(1.3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 7.4
(1.3)
A 		1.9
(-3)
A 		9.5
(3)
A 		9.2
(2.8)
A 		8
B 5.2
(3)
A 		0.9
(-2.9)
A 		0.8
(-3)
A 		1.5
(-2)
A 		4
C 0.5
(-3)
A 		1.3
(-2.1)
A 		5.7
(3)
A 		4.7
(1.8)
A 		5
avr 4.4
(1.6) 		1.4
(-3) 		5.3
(3) 		5.1
(2.7) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 6.8
(2.9)
A 		1.5
(-3)
A 		5.1
(1)
A 		4.5
(0.3)
A 		6.9
(3)
A 		2.9
(-1.4)
A 		5
B 2.4
(-1.9)
A 		1
(-3)
A 		8.8
(3)
A 		6.9
(1.5)
A 		8.3
(2.6)
A 		8.4
(2.7)
A 		8
C 3.7
(0.4)
A 		0.6
(-2.8)
A 		1.1
(-2.3)
A 		0.4
(-3)
A 		6.3
(3)
A 		4.9
(1.6)
A 		6
avr 4.3
(0.2) 		1
(-3) 		5
(0.9) 		3.9
(-0.2) 		7.2
(3) 		5.4
(1.3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176431_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18704
Sequence Type Exemplar sequence
Representative Public ID Y71G12B.A NCBI
Target Description Y71G12B.A /REP_DB=WormBase Gene ID /WP=CE22912 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026654(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026654 NCBI Caenorhabditis elegans Y71G12B.32 (Y71G12B.32) mRNA, complete cds. 9/11 None
SNAP00000001799 ENSEMBL cdna:SNAP chromosome:CEL140:I:1810151:1817019:-1 9/11 None
GENEFINDER00000001811 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1814103:1816018:-1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1812922-1822932(-) 96.29 100.0
Public Domain and Genome References
Gene Title
Entrez Gene 3565893 Entrez gene
SwissProt Q4W5R0 EMBL-EBI
WormBase CE38655 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAY43988 Hypothetical protein Y71G12B.32 [Caenorhabditis elegans] ref|NP_001021825.1| Y71G12B.32 [Caenorhabditis elegans] 1.0E-128
blast AAY43988 Hypothetical protein Y71G12B.32 [Caenorhabditis elegans] ref|NP_001021825.1| Y71G12B.32 [Caenorhabditis elegans] 1.0E-104
blast CAE74407 Hypothetical protein CBG22139 [Caenorhabditis briggsae] 7.0E-54
blast CAE74407 Hypothetical protein CBG22139 [Caenorhabditis briggsae] 8.0E-47
Sequence
Target Sequence 
>C. ELEGANS:176431_AT
tatgacgtcatcggtttgggaaatttggagcagatcagccgagtcggaaagcaattgatt
ctgtgtagctctgacgttactgatgaaaatttgcaaaatttgagctcaaaattggaaact
ttggtgttgaattcgccaacgatcaccgagaacgataaaaaacaattttacaagacggca
cactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGACGTCATCGGTTTGGGAAATT 692 651 1837 Antisense
GTCATCGGTTTGGGAAATTTGGAGC 544 455 1843 Antisense
TTTGGAGCAGATCAGCCGAGTCGGA 710 665 1860 Antisense
CAGCCGAGTCGGAAAGCAATTGATT 477 203 1872 Antisense
GCAATTGATTCTGTGTAGCTCTGAC 516 323 1887 Antisense
GATTCTGTGTAGCTCTGACGTTACT 226 433 1893 Antisense
GTAGCTCTGACGTTACTGATGAAAA 232 457 1901 Antisense
GGAAACTTTGGTGTTGAATTCGCCA 373 525 1950 Antisense
AATTCGCCAACGATCACCGAGAACG 22 179 1966 Antisense
GCCAACGATCACCGAGAACGATAAA 688 277 1971 Antisense
AACAATTTTACAAGACGGCACACTG 617 133 1997 Antisense
Sequence Source Affymetrix Proprietary Database