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[176430_s_at]

Description C30F12.4 /REP_DB=WormBase Gene ID /WP=CE16884 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 39      6grp_total > 98      4grp_total > 33      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 110.3
(-3)
A 		155.7
(0.9)
A 		179.7
(3)
P 		161.1
(1.4)
P 		69
B 66.9
(-3)
A 		122.1
(-0.1)
A 		127.3
(0.2)
A 		179.3
(3)
P 		112
C 121.7
(-3)
P 		156.2
(3)
P 		143.3
(0.8)
P 		150.7
(2)
P 		35
avr 99.6
(-3) 		144.7
(1.2) 		150.1
(1.7) 		163.7
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 546
1 2 3 4 5 6 range
A 116.6
(-2.7)
A 		91.7
(-3)
A 		107.1
(-2.8)
A 		99
(-2.9)
A 		410.3
(0.7)
P 		606.4
(3)
P 		515
B 80.9
(-3)
A 		93.3
(-2.8)
M 		115.6
(-2.6)
M 		141.6
(-2.2)
P 		385.7
(0.9)
P 		549.9
(3)
P 		469
C 61.6
(-3)
A 		139.6
(-2.1)
P 		127.5
(-2.3)
A 		161.2
(-1.9)
P 		429.7
(1)
P 		607.7
(3)
P 		546
avr 86.4
(-3) 		108.2
(-2.7) 		116.7
(-2.6) 		133.9
(-2.4) 		408.6
(0.9) 		588
(3) 		502
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 40.2
(1.3)
A 		33.8
(-0.4)
A 		47
(3)
P 		23.6
(-3)
P 		23
B 21.3
(-3)
A 		30.2
(0.2)
A 		29.5
(-0.1)
A 		38.2
(3)
P 		17
C 40.3
(0.6)
P 		44.9
(1.8)
P 		49.9
(3)
P 		25.4
(-3)
P 		25
avr 33.9
(-0.8) 		36.3
(0.3) 		42.1
(3) 		29.1
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 21.5
(-3)
A 		32.6
(-2.5)
A 		23.3
(-2.9)
A 		25.1
(-2.8)
A 		123.8
(1.9)
P 		147.6
(3)
P 		126
B 28.1
(-3)
A 		31.1
(-2.9)
M 		28.1
(-3)
M 		37.5
(-2.7)
P 		156.7
(1.4)
P 		205.1
(3)
P 		177
C 22.8
(-3)
A 		42.6
(-2.3)
P 		32.5
(-2.7)
A 		32.4
(-2.7)
P 		139
(0.9)
P 		203.4
(3)
P 		181
avr 24.1
(-3) 		35.4
(-2.6) 		28
(-2.9) 		31.7
(-2.7) 		139.8
(1.3) 		185.4
(3) 		161
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176430_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1062
Sequence Type Exemplar sequence
Representative Public ID C30F12.4 NCBI
Target Description C30F12.4 /REP_DB=WormBase Gene ID /WP=CE16884 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059587(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059587 NCBI Caenorhabditis elegans C30F12.4 (C30F12.4) mRNA, complete cds. 11/11 None
SNAP00000017406 ENSEMBL cdna:SNAP chromosome:CEL140:I:6980503:6981801:-1 11/11 None
C30F12.4 ENSEMBL cdna:known chromosome:CEL140:I:6980349:6981849:-1 gene:C30F12.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000017420 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6980433-6981732(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C30F12.4
Entrez Gene 172429 Entrez gene
SwissProt Q95YD9 EMBL-EBI
WormBase CE16884 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK85450 Hypothetical protein C30F12.4 [Caenorhabditis elegans] ref|NP_491988.1| C30F12.4 [Caenorhabditis elegans] 2.0E-27
blast CAE60340 Hypothetical protein CBG03932 [Caenorhabditis briggsae] 3.0E-22
Sequence
Target Sequence 
>C. ELEGANS:176430_S_AT
ccgccaccatattattcatctcaagtctatccatcagttccatctgctccaccaattcaa
ccacagcctcaaatggttccagtttcaatgccaatggttcaacagcagtacatgatgccc
caaatggctcaaatgatgcctcagcaaattgttatgcagcaaccgatcatgacaactgca
ggaccacagatgatgatgactcagatggctcaaatggccaatccagtgcagcttgtctca
cctcaaccgcctgtccaagccccaccgcaacagcaggcgtcgccagctataactctgtgc
gttaaccagtctccacaaattggtggatctcccggaggaggtgtgggtgcactcgtctgt
ccgaaatgtcgaaaaggaatcatcatgcgaaaacaagatcgattgagaaagaagattttg
atgtgccttgccgtgtgctgctgtcctctgacatgttgtctcccactcatttgcatttgt
tgcaactacgttgacgcttgtggagcctgtggcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGCCACCATATTATTCATCTCAAG 605 261 178 Antisense
TCAAGTCTATCCATCAGTTCCATCT 161 633 198 Antisense
CACAGCCTCAAATGGTTCCAGTTTC 528 185 239 Antisense
AACCGATCATGACAACTGCAGGACC 121 147 338 Antisense
AAATGGCCAATCCAGTGCAGCTTGT 373 121 389 Antisense
CGTCGCCAGCTATAACTCTGTGCGT 95 247 455 Antisense
TCTGTGCGTTAACCAGTCTCCACAA 111 609 471 Antisense
TGCACTCGTCTGTCCGAAATGTCGA 553 575 525 Antisense
GAAGATTTTGATGTGCCTTGCCGTG 243 337 588 Antisense
CTCCCACTCATTTGCATTTGTTGCA 12 235 637 Antisense
TTGACGCTTGTGGAGCCTGTGGCAA 396 705 668 Antisense
Sequence Source Affymetrix Proprietary Database