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[176427_s_at]

Description Y105E8B.JJ /REP_DB=WormBase Gene ID /WP=CE24093 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster 6grp_high1_10_10 > 57      4grp_high_8_8 > 0      6grp_total > 59      4grp_total > 55      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 144
1 2 3 4 range
A 298
(3)
P 		153.8
(-3)
P 		221.5
(-0.2)
P 		184.4
(-1.7)
M 		144
B 293.6
(3)
P 		183.1
(-3)
A 		217
(-1.2)
P 		225.1
(-0.7)
P 		111
C 270.7
(3)
P 		197
(-3)
M 		245.6
(1)
P 		222
(-1)
P 		74
avr 287.4
(3) 		178
(-3) 		228
(-0.3) 		210.5
(-1.2) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 249.9
(-1.6)
A 		245.7
(-1.8)
P 		212.3
(-3)
P 		287.2
(-0.2)
P 		235.9
(-2.1)
P 		373.7
(3)
P 		161
B 284.3
(2.6)
P 		195
(-3)
P 		209.1
(-2.1)
P 		253.9
(0.7)
P 		228.8
(-0.9)
P 		291.4
(3)
P 		96
C 312.6
(3)
P 		222.7
(-3)
P 		239.9
(-1.9)
P 		237.5
(-2)
A 		289.1
(1.4)
P 		284.9
(1.2)
P 		90
avr 282.3
(0.9) 		221.1
(-3) 		220.4
(-3) 		259.5
(-0.6) 		251.3
(-1.1) 		316.7
(3) 		96
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 108.5
(3)
P 		33.4
(-2.5)
P 		57.9
(-0.7)
P 		27
(-3)
M 		82
B 93.6
(3)
P 		45.2
(-3)
A 		50.3
(-2.4)
P 		48
(-2.7)
P 		48
C 89.6
(3)
P 		56.6
(-0.8)
M 		85.6
(2.5)
P 		37.4
(-3)
P 		52
avr 97.2
(3) 		45.1
(-2.2) 		64.6
(-0.3) 		37.5
(-3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 46.1
(-3)
A 		87.4
(2.5)
P 		46.2
(-3)
P 		72.8
(0.6)
P 		71.2
(0.4)
P 		91
(3)
P 		45
B 98.9
(2)
P 		64.9
(-1.5)
P 		50.8
(-3)
P 		67.2
(-1.3)
P 		93
(1.4)
P 		108.6
(3)
P 		58
C 115.9
(3)
P 		68
(-1.2)
P 		61.1
(-1.8)
P 		47.8
(-3)
A 		93.5
(1)
P 		95.4
(1.2)
P 		68
avr 87
(1.5) 		73.4
(-0.3) 		52.7
(-3) 		62.6
(-1.7) 		85.9
(1.4) 		98.3
(3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176427_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18810
Sequence Type Exemplar sequence
Representative Public ID Y105E8B.JJ NCBI
Target Description Y105E8B.JJ /REP_DB=WormBase Gene ID /WP=CE24093 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026531(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026531 NCBI Caenorhabditis elegans Y105E8B.2a (Y105E8B.2) mRNA, complete cds. 11/11 None
SNAP00000011732 ENSEMBL cdna:SNAP chromosome:CEL140:I:14642744:14650679:-1 11/11 None
GENEFINDER00000011743 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14642744:14647057:-1 11/11 None
Y105E8B.2a ENSEMBL cdna:known chromosome:CEL140:I:14642580:14650679:-1 gene:Y105E8B.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026532 2/11 Cross Hyb Matching Probes None
Y105E8B.2b.2 2/11 Cross Hyb Matching Probes A 
Y105E8B.2b.1 2/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173320 2 1 NM_001026531 176427_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14642674-14646988(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y105E8B.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC70108 Hypothetical protein Y105E8B.2a [Caenorhabditis elegans] ref|NP_001021702.1| Y105E8B.2a [Caenorhabditis elegans] 0.0
blast CAE72605 Hypothetical protein CBG19796 [Caenorhabditis briggsae] 0.0
blast CAD91705 Hypothetical protein Y105E8B.2b [Caenorhabditis elegans] ref|NP_001021703.1| Y105E8B.2b [Caenorhabditis elegans] 1.0E-147
Sequence
Target Sequence 
>C. ELEGANS:176427_S_AT
gaagatctcactgcaattggtgttcatttgaatttcgaagtcaatcggcttttaagtatt
cccctcgagaaatctctacaaggaaactttgaaaatatctgtgatgctgtgaaaatgcgg
atttcggaggaaaaatggaggccctacgtgctggaatcggaatctgcactgaatcgactc
gttgaggagctttccgatgttgggattaatgtggaatgggcgatttctgcaaatgatgaa
tcgagaagctcgttgaatgtttcgcagaatgttgtgcattttgcgaaagttgcacatact
ctttcgaaggatttggcgccgcttagattatccccaatccaagtgttgtgtgaagtgtat
gcagatgaactatggaagatgtatctacaacatttggctgataacatccgagacggcgcc
gtttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGATCTCACTGCAATTGGTGTTC 82 339 916 Antisense
TCAATCGGCTTTTAAGTATTCCCCT 499 633 956 Antisense
AGTATTCCCCTCGAGAAATCTCTAC 426 61 970 Antisense
AAAATGGAGGCCCTACGTGCTGGAA 458 127 1047 Antisense
GAATCTGCACTGAATCGACTCGTTG 338 329 1075 Antisense
GACTCGTTGAGGAGCTTTCCGATGT 356 373 1091 Antisense
GTGGAATGGGCGATTTCTGCAAATG 293 489 1126 Antisense
GAGAAGCTCGTTGAATGTTTCGCAG 585 391 1158 Antisense
CTCTTTCGAAGGATTTGGCGCCGCT 521 227 1214 Antisense
ATCCCCAATCCAAGTGTTGTGTGAA 244 39 1245 Antisense
ATAACATCCGAGACGGCGCCGTTTT 288 1 1316 Antisense
Sequence Source Affymetrix Proprietary Database