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[176426_at]

Description Y47D7A.3 /REP_DB=WormBase Gene ID /WP=CE26110 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 16      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.2
(-3)
A 		3.7
(-1.6)
A 		6.9
(1.3)
A 		8.8
(3)
A 		7
B 5.5
(3)
A 		4.2
(0.6)
A 		5
(2.1)
A 		2.2
(-3)
A 		3
C 3.7
(-2.6)
A 		7.3
(-0.4)
A 		3.1
(-3)
A 		12.8
(3)
A 		10
avr 3.8
(-3) 		5.1
(-1.1) 		5
(-1.2) 		7.9
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 3.3
(-2.7)
A 		3.4
(-2.6)
A 		3.1
(-3)
A 		7.8
(3)
A 		3.2
(-2.9)
A 		4.8
(-0.8)
A 		5
B 2.1
(-3)
A 		4.2
(-1.5)
A 		5.8
(-0.3)
A 		4.4
(-1.3)
A 		6.7
(0.3)
A 		10.4
(3)
A 		8
C 5.2
(3)
A 		2.9
(-3)
A 		3.6
(-1.2)
A 		4.1
(0.1)
A 		4.5
(1.2)
A 		4.7
(1.7)
A 		2
avr 3.5
(-3) 		3.5
(-3) 		4.2
(-1.6) 		5.4
(0.7) 		4.8
(-0.5) 		6.6
(3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.8
(-3)
A 		0.8
(-3)
A 		1.8
(3)
A 		1.3
(0)
A 		1
B 1.8
(3)
A 		1
(-0.7)
A 		1.2
(0.2)
A 		0.5
(-3)
A 		1
C 1.2
(-2.5)
A 		2.1
(2.5)
A 		1.1
(-3)
A 		2.2
(3)
A 		1
avr 1.3
(-3) 		1.3
(-3) 		1.4
(3) 		1.3
(-3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1.2
(-0.4)
A 		0.7
(-2.6)
A 		2
(3)
A 		1
(-1.3)
A 		1.2
(-0.4)
A 		1
B 0.7
(-3)
A 		1.4
(-1.7)
A 		1.4
(-1.7)
A 		1.2
(-2.1)
A 		2.7
(0.8)
A 		3.9
(3)
A 		3
C 1.9
(3)
A 		0.9
(-2.5)
A 		0.9
(-2.5)
A 		0.8
(-3)
A 		1.5
(0.8)
A 		1.6
(1.4)
A 		1
avr 1.1
(-2.5) 		1.2
(-2) 		1
(-3) 		1.3
(-1.5) 		1.7
(0.5) 		2.2
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176426_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15797
Sequence Type Exemplar sequence
Representative Public ID Y47D7A.3 NCBI
Target Description Y47D7A.3 /REP_DB=WormBase Gene ID /WP=CE26110 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071814(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071814 NCBI Caenorhabditis elegans Y47D7A.3 (Y47D7A.3) mRNA, complete cds. 11/11 None
Y47D7A.3 ENSEMBL cdna:known chromosome:CEL140:V:4410431:4412215:1 gene:Y47D7A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4410430-4412215(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47D7A.3
Entrez Gene 189981 Entrez gene
SwissProt Q95XZ3 EMBL-EBI
WormBase CE26110 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK84609 Hypothetical protein Y47D7A.3 [Caenorhabditis elegans] ref|NP_504215.1| Y47D7A.3 [Caenorhabditis elegans] 1.0E-180
blast CAE67598 Hypothetical protein CBG13142 [Caenorhabditis briggsae] 9.0E-72
blast AAO38655 Nuclear hormone receptor family protein 21, isoform c [Caenorhabditis elegans] ref|NP_001022102.1| Nuclear Hormone Receptor family member (nhr-21) [Caenorhabditis elegans] 9.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 0.0014
Sequence
Target Sequence 
>C. ELEGANS:176426_AT
gggtgtatgctactcaaacggctcatactttccattggacaccaactttcaaccaattcc
agatttgaaaggtatcaccgaattggcaatcgaagcggtgtcaaaaccattggcaaggct
gtgtcttactgaagaggaaattttgattggaagcgtgagaaaaatgcgtggaatcgtttt
ttttttcaaacaaaaaattaatttgtttaccaaaaaatttaaaaatcaaaaaaaaattcc
atcaaatatgtgcctaactcgaaaccattcttcagatcctctcccaccgaaaatgcccca
tgcgagtacccaaattctttctaacgcacgtgaccgttacatacaatgtatgataaatgt
gtcatcatgttctgaagttcaaagtgcgttgcgtctcgccgagatttcattgatttttcc
atcaattacggtaggcaagttgaatggaattaaaaactccaaatctttccaaaacttcat
gacacctaaaatcttaaactttcaaaacctcgtgcacttgacatcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTGTATGCTACTCAAACGGCTCA 541 495 354 Antisense
CGGCTCATACTTTCCATTGGACACC 285 241 372 Antisense
ACACCAACTTTCAACCAATTCCAGA 544 109 392 Antisense
ACCATTGGCAAGGCTGTGTCTTACT 439 87 459 Antisense
GTGCCTAACTCGAAACCATTCTTCA 154 477 603 Antisense
CCATGCGAGTACCCAAATTCTTTCT 563 271 651 Antisense
AATTCTTTCTAACGCACGTGACCGT 116 175 666 Antisense
AGTTCAAAGTGCGTTGCGTCTCGCC 645 63 729 Antisense
GCGTCTCGCCGAGATTTCATTGATT 603 291 744 Antisense
ATCTTTCCAAAACTTCATGACACCT 331 31 816 Antisense
CAAAACCTCGTGCACTTGACATCAG 484 189 856 Antisense
Sequence Source Affymetrix Proprietary Database