[Home] | [Total List]

[176425_s_at]

Description Y105E8B.HH /REP_DB=WormBase Gene ID /WP=CE24092 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 31      4grp_high_8_8 > 62      6grp_highest_nonorm > 34      6grp_total > 43      4grp_total > 58      6grp_highest_sub > De      6grp_cgc > 90      6grp_high1_sub > 03      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2758
1 2 3 4 range
A 1013.1
(-0.7)
P 		1245.3
(-0.1)
P 		2365.9
(3)
P 		182
(-3)
P 		2184
B 845.7
(-1)
P 		2063.8
(2.6)
P 		2194.3
(3)
P 		149.4
(-3)
P 		2045
C 943.2
(-1.1)
P 		2520.1
(2.3)
P 		2829.5
(3)
P 		71.7
(-3)
A 		2758
avr 934
(-0.9) 		1943.1
(1.7) 		2463.2
(3) 		134.4
(-3) 		2329

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5598
1 2 3 4 5 6 range
A 887.1
(-3)
P 		2497.4
(1.7)
P 		2941.9
(3)
P 		2532.8
(1.8)
P 		1260.9
(-1.9)
P 		956.4
(-2.8)
P 		2055
B 2862.2
(1.2)
P 		2470.9
(0.5)
P 		3209.7
(1.9)
P 		1428.7
(-1.6)
P 		3762.4
(3)
P 		711.8
(-3)
P 		3051
C 4945
(1.8)
P 		1713.4
(-1.6)
P 		6035.4
(3)
P 		1901.7
(-1.4)
P 		4229
(1.1)
P 		437.3
(-3)
P 		5598
avr 2898.1
(0.9) 		2227.2
(-0.3) 		4062.3
(3) 		1954.4
(-0.8) 		3084.1
(1.3) 		701.8
(-3) 		3361
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 974
1 2 3 4 range
A 368.9
(0.5)
P 		270.3
(-0.5)
P 		618.5
(3)
P 		26.6
(-3)
P 		592
B 269.7
(-0)
P 		509.7
(3)
P 		508.5
(3)
P 		31.8
(-3)
P 		478
C 312.2
(-1.2)
P 		724.5
(1.4)
P 		986.2
(3)
P 		12.1
(-3)
A 		974
avr 316.9
(-0.4) 		501.5
(1.2) 		704.4
(3) 		23.5
(-3) 		681

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1687
1 2 3 4 5 6 range
A 163.5
(-3)
P 		888.2
(3)
P 		640.7
(1)
P 		642.4
(1)
P 		380.5
(-1.2)
P 		232.9
(-2.4)
P 		725
B 995.9
(0.5)
P 		822.5
(-0.4)
P 		779.4
(-0.6)
P 		378.4
(-2.5)
P 		1528.6
(3)
P 		265.4
(-3)
P 		1263
C 1832.9
(3)
P 		522.8
(-1.7)
P 		1536.1
(1.9)
P 		382.4
(-2.2)
P 		1368.4
(1.3)
P 		146.4
(-3)
P 		1687
avr 997.4
(2.3) 		744.5
(0.6) 		985.4
(2.3) 		467.7
(-1.3) 		1092.5
(3) 		214.9
(-3) 		878
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176425_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18802
Sequence Type Exemplar sequence
Representative Public ID Y105E8B.HH NCBI
Target Description Y105E8B.HH /REP_DB=WormBase Gene ID /WP=CE24092 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026524, NM_001026529, NM_001026527, NM_001026525
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026525 NCBI Caenorhabditis elegans LEVamisole resistant family member (lev-11) (lev-11) mRNA, complete cds. None
NM_001026527 NCBI Caenorhabditis elegans LEVamisole resistant family member (lev-11) (lev-11) mRNA, complete cds. None
NM_001026529 NCBI Caenorhabditis elegans LEVamisole resistant family member (lev-11) (lev-11) mRNA, complete cds. None
GENEFINDER00000011747 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14636350:14639077:-1 None
SNAP00000011731 ENSEMBL cdna:SNAP chromosome:CEL140:I:14637866:14639077:-1 None
Y105E8B.1a.1 ENSEMBL cdna:known chromosome:CEL140:I:14628878:14639077:-1 gene:Y105E8B.1 A 
Y105E8B.1a.2 ENSEMBL cdna:known chromosome:CEL140:I:14628939:14639077:-1 gene:Y105E8B.1 A 
Y105E8B.1f ENSEMBL cdna:known chromosome:CEL140:I:14629059:14639372:-1 gene:Y105E8B.1 A 
Y105E8B.1b.2 ENSEMBL cdna:known chromosome:CEL140:I:14629292:14639190:-1 gene:Y105E8B.1 A 
Y105E8B.1b.3 ENSEMBL cdna:known chromosome:CEL140:I:14630548:14638063:-1 gene:Y105E8B.1 None
Y105E8B.1d ENSEMBL cdna:known chromosome:CEL140:I:14630548:14639077:-1 gene:Y105E8B.1 None
NM_001026524 NCBI Caenorhabditis elegans LEVamisole resistant family member (lev-11) (lev-11) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14636280-14639008(-) 95.63 97.42
Public Domain and Genome References
Ensembl Y105E8B.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC70114 Hypothetical protein Y105E8B.1a [Caenorhabditis elegans] ref|NP_001021695.1| LEVamisole resistant family member (lev-11) [Caenorhabditis elegans] sp|Q22866|TPM1_CAEEL Tropomyosin isoforms 1/2 dbj|BAA07543.1| CeTMI [Caenorhabditis elegans] 1.0E-129
blast CAC70112 Hypothetical protein Y105E8B.1d [Caenorhabditis elegans] ref|NP_001021698.1| LEVamisole resistant family member (lev-11) [Caenorhabditis elegans] dbj|BAA07541.1| CeTMII [Caenorhabditis elegans] dbj|BAA07544.1| CeTMII [Caenorhabditis elegans] 1.0E-128
blast BAA07540.1 CeTMI [Caenorhabditis elegans] 1.0E-127
blast A44980 tropomyosin, obliquely striated muscle - nematode (Trichostrongylus colubriformis) 1.0E-123
Protein Domains
Database ID Description E-Value
Pfam IPR000533 EMBL-EBI Tropomyosin 1.0E-126
Pfam IPR000533 EMBL-EBI Tropomyosin 9.5E-23
Pfam IPR000533 EMBL-EBI Tropomyosin 2.0E-109
Pfam IPR000533 EMBL-EBI Tropomyosin 3.3E-8
Sequence
Target Sequence 
>C. ELEGANS:176425_S_AT
gaagatgcaggccatgaagatcgagaaggacaacgctctcgatcgtgccgatgccgctga
agagaaagtccgtcagatcaccgagaagctcgaaagagtcgaggaagagctcataaactc
ccagaataacatgcactcacaccggagacgatttggacaaagctcagtccgatttcagaa
aacaaaattttttagagacactggcgctcaagaggacctctccgccgccacctccaagct
cgaggagaaggagaagaccgttcaagag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGATGCAGGCCATGAAGATCGAG 411 337 30 Antisense
GAGAAGGACAACGCTCTCGATCGTG 158 391 52 Antisense
TCGTGCCGATGCCGCTGAAGAGAAA 598 605 72 Antisense
GAGAAAGTCCGTCAGATCACCGAGA 420 393 91 Antisense
TCCGTCAGATCACCGAGAAGCTCGA 623 593 98 Antisense
GAGGAAGAGCTCATAAACTCCCAGA 329 405 130 Antisense
AACTCCCAGAATAACATGCACTCAC 474 141 145 Antisense
ACATGCACTCACACCGGAGACGATT 617 105 158 Antisense
CTCACACCGGAGACGATTTGGACAA 40 229 165 Antisense
CGCCACCTCCAAGCTCGAGGAGAAG 674 257 255 Antisense
GGAGAAGGAGAAGACCGTTCAAGAG 300 515 273 Antisense
Sequence Source Affymetrix Proprietary Database