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[176424_at]

Description Y105E8B.HH /REP_DB=WormBase Gene ID /WP=CE24092 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster 6grp_total > 94      4grp_total > 27      6grp_cgc > 88      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 19.4
(0.8)
A 		25.7
(3)
A 		8.2
(-3)
A 		13
(-1.4)
A 		18
B 19.8
(-3)
P 		33.6
(3)
A 		22.7
(-1.7)
A 		32.3
(2.4)
A 		14
C 17.4
(-0.5)
P 		23.3
(0.6)
A 		3.1
(-3)
A 		37.1
(3)
A 		34
avr 18.9
(-0.2) 		27.5
(3) 		11.3
(-3) 		27.5
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 34.5
(1.9)
A 		3
(-3)
A 		30.2
(1.2)
A 		22.6
(0)
A 		41.9
(3)
A 		18.2
(-0.7)
A 		39
B 7.4
(-3)
A 		19.3
(-0.6)
P 		9.9
(-2.5)
A 		12
(-2.1)
A 		36.6
(3)
A 		17.2
(-1)
A 		29
C 21.1
(0.4)
M 		13
(-1)
A 		3.7
(-2.6)
A 		36.6
(3)
A 		1.5
(-3)
A 		22.6
(0.6)
M 		35
avr 21
(0.7) 		11.8
(-3) 		14.6
(-1.9) 		23.7
(1.8) 		26.7
(3) 		19.3
(0) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 7.1
(3)
A 		5.6
(1.3)
A 		2.2
(-2.7)
A 		1.9
(-3)
A 		5
B 6.3
(-1)
P 		8.3
(3)
A 		5.3
(-3)
A 		6.9
(0.2)
A 		3
C 5.8
(2)
P 		6.7
(3)
A 		1.1
(-3)
A 		6.3
(2.6)
A 		6
avr 6.4
(2.3) 		6.9
(3) 		2.9
(-3) 		5
(0.2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 6.4
(-0.2)
A 		1.1
(-3)
A 		6.6
(-0.1)
A 		5.7
(-0.6)
A 		12.6
(3)
A 		4.4
(-1.3)
A 		12
B 2.6
(-2.9)
A 		6.4
(-1.1)
P 		2.4
(-3)
A 		3.2
(-2.6)
A 		14.9
(3)
A 		6.4
(-1.1)
A 		13
C 7.8
(3)
M 		4
(-0.1)
A 		0.9
(-2.7)
A 		7.4
(2.7)
A 		0.5
(-3)
A 		7.6
(2.8)
M 		7
avr 5.6
(-0.7) 		3.8
(-2.5) 		3.3
(-3) 		5.4
(-0.9) 		9.3
(3) 		6.1
(-0.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176424_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18802
Sequence Type Exemplar sequence
Representative Public ID Y105E8B.HH NCBI
Target Description Y105E8B.HH /REP_DB=WormBase Gene ID /WP=CE24092 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026524, NM_001026529, NM_001026527, NM_001026525
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026525 NCBI Caenorhabditis elegans LEVamisole resistant family member (lev-11) (lev-11) mRNA, complete cds. None
NM_001026527 NCBI Caenorhabditis elegans LEVamisole resistant family member (lev-11) (lev-11) mRNA, complete cds. None
NM_001026529 NCBI Caenorhabditis elegans LEVamisole resistant family member (lev-11) (lev-11) mRNA, complete cds. None
GENEFINDER00000011747 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14636350:14639077:-1 None
SNAP00000011731 ENSEMBL cdna:SNAP chromosome:CEL140:I:14637866:14639077:-1 None
Y105E8B.1a.1 ENSEMBL cdna:known chromosome:CEL140:I:14628878:14639077:-1 gene:Y105E8B.1 A 
Y105E8B.1a.2 ENSEMBL cdna:known chromosome:CEL140:I:14628939:14639077:-1 gene:Y105E8B.1 A 
Y105E8B.1f ENSEMBL cdna:known chromosome:CEL140:I:14629059:14639372:-1 gene:Y105E8B.1 A 
Y105E8B.1b.2 ENSEMBL cdna:known chromosome:CEL140:I:14629292:14639190:-1 gene:Y105E8B.1 A 
Y105E8B.1b.3 ENSEMBL cdna:known chromosome:CEL140:I:14630548:14638063:-1 gene:Y105E8B.1 None
Y105E8B.1d ENSEMBL cdna:known chromosome:CEL140:I:14630548:14639077:-1 gene:Y105E8B.1 None
NM_001026524 NCBI Caenorhabditis elegans LEVamisole resistant family member (lev-11) (lev-11) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14636280-14639008(-) 95.63 97.42
Public Domain and Genome References
Ensembl Y105E8B.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC70114 Hypothetical protein Y105E8B.1a [Caenorhabditis elegans] ref|NP_001021695.1| LEVamisole resistant family member (lev-11) [Caenorhabditis elegans] sp|Q22866|TPM1_CAEEL Tropomyosin isoforms 1/2 dbj|BAA07543.1| CeTMI [Caenorhabditis elegans] 1.0E-129
blast CAC70112 Hypothetical protein Y105E8B.1d [Caenorhabditis elegans] ref|NP_001021698.1| LEVamisole resistant family member (lev-11) [Caenorhabditis elegans] dbj|BAA07541.1| CeTMII [Caenorhabditis elegans] dbj|BAA07544.1| CeTMII [Caenorhabditis elegans] 1.0E-128
blast BAA07540.1 CeTMI [Caenorhabditis elegans] 1.0E-127
blast A44980 tropomyosin, obliquely striated muscle - nematode (Trichostrongylus colubriformis) 1.0E-123
Protein Domains
Database ID Description E-Value
Pfam IPR000533 EMBL-EBI Tropomyosin 1.0E-126
Pfam IPR000533 EMBL-EBI Tropomyosin 9.5E-23
Pfam IPR000533 EMBL-EBI Tropomyosin 2.0E-109
Pfam IPR000533 EMBL-EBI Tropomyosin 3.3E-8
Sequence
Target Sequence 
>C. ELEGANS:176424_AT
gacaaagctcagtccgatttcagaaaacaaaattttttagagacactggcgctcaagagg
acctctccgccgccacctccaagctcgaggagaaggagaagaccgttcaagaggaaaaaa
acctttttttgtcgagaacttttttccctctcccgacgttttttttgcacacaacttggc
gcgccgaaatccaatttctttgcgaaaagctcaatcccattttccgttactgctcaaatg
agcgagaggcgaagaagaagaagaagataaagttcgaggagtgtatgaagtgctgttggg
gg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAAAGCTCAGTCCGATTTCAGAA 443 365 185 Antisense
AGCTCAGTCCGATTTCAGAAAACAA 371 79 190 Antisense
AAAATTTTTTAGAGACACTGGCGCT 416 129 213 Antisense
AGACACTGGCGCTCAAGAGGACCTC 348 71 225 Antisense
CGACGTTTTTTTTGCACACAACTTG 698 249 338 Antisense
TTTTTTTGCACACAACTTGGCGCGC 609 673 344 Antisense
CAACTTGGCGCGCCGAAATCCAATT 391 189 356 Antisense
GCGCCGAAATCCAATTTCTTTGCGA 44 289 365 Antisense
GAAAAGCTCAATCCCATTTTCCGTT 190 355 388 Antisense
ATTTTCCGTTACTGCTCAAATGAGC 227 13 403 Antisense
GGAGTGTATGAAGTGCTGTTGGGGG 669 515 462 Antisense
Sequence Source Affymetrix Proprietary Database