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[176423_at]

Description Y71G12B.J /REP_DB=WormBase Gene ID /WP=CE22890 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 64      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 56.9
(-0.6)
P 		36.6
(-2.6)
A 		32.9
(-3)
A 		92.4
(3)
P 		60
B 40.6
(1)
P 		29
(-0.6)
A 		10.3
(-3)
A 		56.3
(3)
P 		46
C 64
(-1.2)
A 		55.8
(-2)
A 		45
(-3)
A 		107.4
(3)
P 		62
avr 53.8
(-0.4) 		40.5
(-1.8) 		29.4
(-3) 		85.4
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 44.8
(2.6)
A 		5.8
(-3)
A 		47.5
(3)
A 		46.1
(2.8)
A 		36.1
(1.4)
A 		46.6
(2.9)
A 		42
B 21.7
(-3)
A 		49.6
(2.6)
A 		51.7
(3)
A 		45.5
(1.8)
A 		42.1
(1.1)
A 		32.8
(-0.8)
A 		30
C 19.6
(-1.7)
A 		54.5
(3)
A 		51.8
(2.6)
A 		41.9
(1.3)
A 		9.6
(-3)
A 		40.6
(1.1)
A 		45
avr 28.7
(-3) 		36.6
(-0.8) 		50.3
(3) 		44.5
(1.4) 		29.3
(-2.8) 		40
(0.1) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 20.7
(3)
P 		8
(-3)
A 		8.6
(-2.7)
A 		13.5
(-0.4)
P 		13
B 13
(3)
P 		7.2
(-0.3)
A 		2.4
(-3)
A 		12
(2.4)
P 		11
C 21.2
(3)
A 		16.1
(-2.6)
A 		15.7
(-3)
A 		18.1
(-0.4)
P 		6
avr 18.3
(3) 		10.4
(-2) 		8.9
(-3) 		14.5
(0.6) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 8.3
(0.9)
A 		2.1
(-3)
A 		10.3
(2.1)
A 		11.7
(3)
A 		10.9
(2.5)
A 		11.3
(2.8)
A 		10
B 7.6
(-3)
A 		16.5
(2.6)
A 		12.5
(0.1)
A 		12.1
(-0.2)
A 		17.1
(3)
A 		12.2
(-0.1)
A 		10
C 7.3
(-1.1)
A 		16.6
(3)
A 		13.2
(1.5)
A 		8.4
(-0.6)
A 		3.1
(-3)
A 		13.6
(1.7)
A 		14
avr 7.7
(-3) 		11.7
(2.1) 		12
(2.5) 		10.7
(0.8) 		10.4
(0.4) 		12.4
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176423_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18737
Sequence Type Exemplar sequence
Representative Public ID Y71G12B.J NCBI
Target Description Y71G12B.J /REP_DB=WormBase Gene ID /WP=CE22890 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y71G12B.J
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y71G12B.J Y71G12B.J /REP_DB=WormBase Gene ID /WP=CE22890 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058485 11/11 Negative Strand Matching Probes A 
NM_001026647 11/11 Negative Strand Matching Probes None
GENEFINDER00000001829 11/11 Negative Strand Matching Probes None
SNAP00000001787 11/11 Negative Strand Matching Probes None
Y71G12B.11b 11/11 Negative Strand Matching Probes A B 
Y71G12B.11a 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1728148-1728691(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:176423_AT
cgcttcagtctccgggttaactgtgttcaagaatttgccgaacgctccacaaagtttttt
tgtcgcatcgagaagatcgcctcgttcccggtgctccatgaatgcaccaagatcgcgaac
atttctgctaacatctggaaggttcgagccgatcgtggcgatggctgttccgacgcgatc
gtcgtattcctcgactgcggtccattgaacgacctgagcggtcgcggcgcccatcgccgc
gagcctctcattcacattctccttattcaccgcctgttgctcctccatccaacgattctg
cgaataatcgtcattgaaccgtggaatatcgatttgtggctcggcttcaagttcgatctc
tgcgtcctccacagcccggatggttgcttcgattgttccgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCTTCAGTCTCCGGGTTAACTGTG 506 251 46 Antisense
TCAAGAATTTGCCGAACGCTCCACA 203 631 72 Antisense
GCATCGAGAAGATCGCCTCGTTCCC 619 309 110 Antisense
GTTCCCGGTGCTCCATGAATGCACC 86 443 129 Antisense
GATCGCGAACATTTCTGCTAACATC 416 417 156 Antisense
ACATCTGGAAGGTTCGAGCCGATCG 201 107 176 Antisense
GAGCCGATCGTGGCGATGGCTGTTC 573 385 191 Antisense
CCGACGCGATCGTCGTATTCCTCGA 12 265 215 Antisense
GACTGCGGTCCATTGAACGACCTGA 675 373 238 Antisense
TTGTGGCTCGGCTTCAAGTTCGATC 188 709 379 Antisense
GGATGGTTGCTTCGATTGTTCCGAT 6 515 423 Antisense
Sequence Source Affymetrix Proprietary Database