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[176422_at]

Description C30F12.1 /REP_DB=WormBase Gene ID /WP=CE16881 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 23      6grp_total > 22      4grp_total > 38      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 413
1 2 3 4 range
A 565.3
(3)
P 		279.7
(-1.3)
A 		168.7
(-3)
A 		293.2
(-1.1)
A 		397
B 548.5
(3)
P 		213.7
(-2.3)
A 		166.9
(-3)
A 		210.8
(-2.3)
P 		382
C 579.8
(3)
P 		246.9
(-1.9)
A 		170.7
(-3)
A 		255.6
(-1.8)
M 		409
avr 564.5
(3) 		246.8
(-1.8) 		168.8
(-3) 		253.2
(-1.7) 		396

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 217
1 2 3 4 5 6 range
A 292.7
(0.4)
M 		368.7
(3)
P 		322.2
(1.4)
P 		234.9
(-1.6)
P 		266.1
(-0.5)
P 		194.8
(-3)
M 		174
B 316.9
(2.6)
P 		328
(3)
P 		285.4
(1.5)
P 		297.6
(1.9)
P 		228.5
(-0.6)
P 		160.3
(-3)
P 		168
C 335.5
(1.7)
P 		377.7
(3)
P 		299.9
(0.7)
P 		294.8
(0.5)
M 		223.5
(-1.6)
P 		177.9
(-3)
P 		200
avr 315
(1.6) 		358.1
(3) 		302.5
(1.2) 		275.8
(0.3) 		239.4
(-0.9) 		177.7
(-3) 		180
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 205.8
(3)
P 		60.7
(-2.3)
A 		44.1
(-3)
A 		42.9
(-3)
A 		163
B 174.9
(3)
P 		52.8
(-2.4)
A 		38.7
(-3)
A 		44.9
(-2.7)
P 		136
C 191.9
(3)
P 		71
(-1.9)
A 		59.5
(-2.3)
A 		43.1
(-3)
M 		149
avr 190.9
(3) 		61.5
(-2.3) 		47.4
(-2.8) 		43.6
(-3) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 54
(-2.5)
M 		131.1
(3)
P 		70.2
(-1.4)
P 		59.6
(-2.1)
P 		80.3
(-0.6)
P 		47.4
(-3)
M 		84
B 110.3
(3)
P 		109.2
(2.9)
P 		69.3
(-1.9)
P 		78.8
(-0.7)
P 		92.8
(0.9)
P 		59.8
(-3)
P 		51
C 124.4
(3)
P 		115.3
(2.2)
P 		76.3
(-1.4)
P 		59.3
(-3)
M 		72.3
(-1.8)
P 		59.6
(-3)
P 		65
avr 96.2
(0.9) 		118.5
(3) 		71.9
(-1.4) 		65.9
(-2) 		81.8
(-0.5) 		55.6
(-3) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176422_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.743
Sequence Type Exemplar sequence
Representative Public ID C30F12.1 NCBI
Target Description C30F12.1 /REP_DB=WormBase Gene ID /WP=CE16881 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059584(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059584 NCBI Caenorhabditis elegans C30F12.1 (C30F12.1) mRNA, complete cds. 10/11 None
GENEFINDER00000017419 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6965309:6969271:-1 10/11 None
C30F12.1 ENSEMBL cdna:known chromosome:CEL140:I:6965686:6969271:-1 gene:C30F12.1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017402 6/11 Cross Hyb Matching Probes None
SNAP00000017403 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6965616-6969202(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C30F12.1
Entrez Gene 172426 Entrez gene
SwissProt Q95YE2 EMBL-EBI
WormBase CE34264 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.22080.1.S1_AT similar to zinc finger CCCH type containing 12A cfa
CANINE_2:CFAAFFX.22082.1.S1_S_AT similar to zinc finger CCCH type containing 12A cfa
CHICKEN:GGA.11857.1.S1_S_AT similar to KIAA1726 protein gga
CHICKEN:GGAAFFX.25184.1.S1_AT similar to KIAA1726 protein gga
HU35KSUBA:RC_D59550_S_AT zinc finger CCCH-type containing 12C hs
HU35KSUBB:RC_AA131471_AT zinc finger CCCH-type containing 12C hs
HU35KSUBB:RC_AA126803_AT zinc finger CCCH-type containing 12C hs
U133_X3P:HS2.376289.1.A1_3P_AT zinc finger CCCH-type containing 12C hs
U133_X3P:HS.164719.0.S1_3P_AT zinc finger CCCH-type containing 12C hs
HG-U133_PLUS_2:1559763_AT zinc finger CCCH-type containing 12C hs
HG-U133_PLUS_2:231899_AT zinc finger CCCH-type containing 12C hs
HG-U133B:231899_AT zinc finger CCCH-type containing 12C hs
HG-U95B:41979_R_AT zinc finger CCCH-type containing 12C hs
HG-U95B:47845_AT zinc finger CCCH-type containing 12C hs
HG-U95B:59365_AT zinc finger CCCH-type containing 12C hs
HG-U95D:91763_AT zinc finger CCCH-type containing 12C hs
Protein Similarities
Method ID Description E-Value
blast AAK85447 Hypothetical protein C30F12.1 [Caenorhabditis elegans] ref|NP_491985.3| C30F12.1 [Caenorhabditis elegans] 0.0
blast CAE60343 Hypothetical protein CBG03935 [Caenorhabditis briggsae] 1.0E-146
blast XP_370654 PREDICTED: KIAA1726 protein [Homo sapiens] 2.0E-52
Sequence
Target Sequence 
>C. ELEGANS:176422_AT
aacagacgacgtgctctcagaacttgtaaaaatgggtcttcctggtggtaaaccagaaaa
ttctggaaaatctggaagtagaaattctcctgaaccaatcatgacttcctctgcatcgtc
ttcttctgcctcatcatcgtcaagtcatcgtcctattagacaatcagtatcaattgccac
gtcatcacctgccacgtcatcatccacaccatccaaatacaacccggatccaagtttgag
agctgtggttgttgatggatcaaatgttgcaatgttacacggccgtaaagaagtcttctc
gtgtgcaggtctccgcgagtgtctcaattattttctggaacggggacatccggaagttct
catatttattccccaatacagaaacgttaacggtcgtcgagttgtctgccacgacgatag
atatattctcaggactgctgaactaaaagacgctgtaattgtgtcaaacgacgaatatcg
tgacttgacacgtgagaatcctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACAGACGACGTGCTCTCAGAACTT 253 137 552 Antisense
TGAACCAATCATGACTTCCTCTGCA 213 575 642 Antisense
ATCATCGTCAAGTCATCGTCCTATT 267 29 684 Antisense
CCACACCATCCAAATACAACCCGGA 646 273 755 Antisense
AATGTTGCAATGTTACACGGCCGTA 462 159 814 Antisense
AAAGAAGTCTTCTCGTGTGCAGGTC 578 123 838 Antisense
GTCTCCGCGAGTGTCTCAATTATTT 698 469 860 Antisense
GGGGACATCCGGAAGTTCTCATATT 652 497 893 Antisense
GTTAACGGTCGTCGAGTTGTCTGCC 274 445 937 Antisense
GAGTTGTCTGCCACGACGATAGATA 699 397 950 Antisense
GTGACTTGACACGTGAGAATCCTGC 29 483 1031 Antisense
Sequence Source Affymetrix Proprietary Database